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Aliases for SNORD49A Gene

Subcategory (RNA class) for SNORD49A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD49A Gene

  • Small Nucleolar RNA, C/D Box 49A 2 3
  • RNA, U49 Small Nuclear 2 3
  • RNU49 3
  • U49A 3
  • U49 3

External Ids for SNORD49A Gene

Previous Symbols for SNORD49A Gene

  • RNU49

Summaries for SNORD49A Gene

GeneCards Summary for SNORD49A Gene

SNORD49A (Small Nucleolar RNA, C/D Box 49A) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD49A Gene

Genomics for SNORD49A Gene

Genomic Location for SNORD49A Gene

Start:
16,440,036 bp from pter
End:
16,440,106 bp from pter
Size:
71 bases
Orientation:
Plus strand

Genomic View for SNORD49A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD49A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD49A Gene

Regulatory Elements for SNORD49A Gene

Proteins for SNORD49A Gene

Post-translational modifications for SNORD49A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD49A Gene

Domains for SNORD49A Gene

Gene Families for SNORD49A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD49A: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD49A Gene

Function for SNORD49A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD49A Gene

Localization for SNORD49A Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD49A Gene

Pathways for SNORD49A Gene

SuperPathways for SNORD49A Gene

No Data Available

Interacting Proteins for SNORD49A Gene

Gene Ontology (GO) - Biological Process for SNORD49A Gene

None

No data available for Pathways by source for SNORD49A Gene

Transcripts for SNORD49A Gene

mRNA/cDNA for SNORD49A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD49A Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c · 5d · 5e · 5f ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d · 8e · 8f
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - - - -
SP3: - - - - - - - -
SP4: - - - - - -
SP5: - - - - -
SP6: - - - - - - -
SP7: - - - - - - - - - - - - -
SP8: - - - - - - - - - -
SP9: - - - - - - -
SP10: - - - - - - - - -
SP11: - - -
SP12: - - - -
SP13: - - - - - - - -
SP14: - - - - - - - - -
SP15: - - - - - -
SP16: - - - - - - - - -
SP17: - - - - - - -
SP18: - -
SP19: - - - - - - - - - - -
SP20: - -
SP21: -

Relevant External Links for SNORD49A Gene

GeneLoc Exon Structure for
SNORD49A
ECgene alternative splicing isoforms for
SNORD49A

Expression for SNORD49A Gene

No Expression Related Data Available

Orthologs for SNORD49A Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD49A Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord49a 16
Species with no ortholog for SNORD49A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD49A Gene

ENSEMBL:
Gene Tree for SNORD49A (if available)
TreeFam:
Gene Tree for SNORD49A (if available)

Paralogs for SNORD49A Gene

No data available for Paralogs for SNORD49A Gene

Variants for SNORD49A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD49A Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV Deletion 23290073

Relevant External Links for SNORD49A Gene

HapMap Linkage Disequilibrium report
SNORD49A

No data available for Sequence variations from dbSNP and Humsavar for SNORD49A Gene

Disorders for SNORD49A Gene

No disorders were found for SNORD49A Gene.

No data available for UniProtKB/Swiss-Prot for SNORD49A Gene

Publications for SNORD49A Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD49A Gene

Sources for SNORD49A Gene

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