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Aliases for SNORD48 Gene

Subcategory (RNA class) for SNORD48 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD48 Gene

  • Small Nucleolar RNA, C/D Box 48 2 3
  • RNA, U48 Small Nuclear 2 3
  • RNU48 3
  • U48 3

External Ids for SNORD48 Gene

Previous HGNC Symbols for SNORD48 Gene

  • RNU48

Previous GeneCards Identifiers for SNORD48 Gene

  • GC06P031913
  • GC06P031915
  • GC06P031803
  • GC06P031589

Summaries for SNORD48 Gene

GeneCards Summary for SNORD48 Gene

SNORD48 (Small Nucleolar RNA, C/D Box 48) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD48 include hiv-1.

fRNAdb sequence ontologies for SNORD48 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD48 Gene

Genomics for SNORD48 Gene

Regulatory Elements for SNORD48 Gene

Genomic Location for SNORD48 Gene

Start:
31,835,263 bp from pter
End:
31,835,326 bp from pter
Size:
64 bases
Orientation:
Plus strand

Genomic View for SNORD48 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORD48 Gene

Post-translational modifications for SNORD48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD48 Gene

Domains for SNORD48 Gene

Gene Families for SNORD48 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD48: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD48 Gene

Function for SNORD48 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD48 Gene

Localization for SNORD48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD48 Gene

Pathways for SNORD48 Gene

SuperPathways for SNORD48 Gene

No Data Available

Interacting Proteins for SNORD48 Gene

Gene Ontology (GO) - Biological Process for SNORD48 Gene

None

No data available for Pathways by source for SNORD48 Gene

Transcripts for SNORD48 Gene

mRNA/cDNA for SNORD48 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD48 Gene

No ASD Table

Relevant External Links for SNORD48 Gene

GeneLoc Exon Structure for
SNORD48
ECgene alternative splicing isoforms for
SNORD48

Expression for SNORD48 Gene

mRNA expression in normal human tissues for SNORD48 Gene

genes like me logo Genes that share expressions with SNORD48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD48 Gene

Orthologs for SNORD48 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD48 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD48 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD48 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD48 36
  • 90 (a)
OneToMany
SNORD48 36
  • 81 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25744 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD48 36
  • 79 (a)
OneToOne
Species with no ortholog for SNORD48:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD48 Gene

ENSEMBL:
Gene Tree for SNORD48 (if available)
TreeFam:
Gene Tree for SNORD48 (if available)

Paralogs for SNORD48 Gene

No data available for Paralogs for SNORD48 Gene

Variants for SNORD48 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD48 Gene

Variant ID Type Subtype PubMed ID
dgv6583n71 CNV Loss 21882294
dgv6590n71 CNV Loss 21882294
dgv6592n71 CNV Loss 21882294

Relevant External Links for SNORD48 Gene

HapMap Linkage Disequilibrium report
SNORD48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD48 Gene

Disorders for SNORD48 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for SNORD48 Gene including...

Search for SNORD48 Gene in MalaCards »
genes like me logo Genes that share disorders with SNORD48: view

No data available for UniProtKB/Swiss-Prot for SNORD48 Gene

Publications for SNORD48 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J. … Goldstein D.B. (PLoS Genet. 2009) 3
  4. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G. … Rudan I. (PLoS Genet. 2013) 3

Products for SNORD48 Gene

Sources for SNORD48 Gene

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