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Aliases for SNORD47 Gene

Subcategory (RNA class) for SNORD47 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD47 Gene

  • Small Nucleolar RNA, C/D Box 47 2 3
  • RNA, U47 Small Nuclear 2 3
  • RNU47 3
  • U47 3

External Ids for SNORD47 Gene

Previous Symbols for SNORD47 Gene

  • RNU47

Summaries for SNORD47 Gene

GeneCards Summary for SNORD47 Gene

SNORD47 (Small Nucleolar RNA, C/D Box 47) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD47 Gene

Genomics for SNORD47 Gene

Genomic Location for SNORD47 Gene

Start:
173,864,369 bp from pter
End:
173,864,445 bp from pter
Size:
77 bases
Orientation:
Minus strand

Genomic View for SNORD47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD47 Gene

Regulatory Elements for SNORD47 Gene

Proteins for SNORD47 Gene

Post-translational modifications for SNORD47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD47 Gene

Domains for SNORD47 Gene

Gene Families for SNORD47 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD47: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD47 Gene

Function for SNORD47 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD47 Gene

Localization for SNORD47 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD47 Gene

Pathways for SNORD47 Gene

SuperPathways for SNORD47 Gene

No Data Available

Interacting Proteins for SNORD47 Gene

Gene Ontology (GO) - Biological Process for SNORD47 Gene

None

No data available for Pathways by source for SNORD47 Gene

Transcripts for SNORD47 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD47 Gene

No ASD Table

Relevant External Links for SNORD47 Gene

GeneLoc Exon Structure for
SNORD47
ECgene alternative splicing isoforms for
SNORD47

Expression for SNORD47 Gene

No Expression Related Data Available

Orthologs for SNORD47 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD47 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord47 16
Species with no ortholog for SNORD47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for SNORD47 Gene

Paralogs for SNORD47 Gene

No data available for Paralogs for SNORD47 Gene

Variants for SNORD47 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD47 Gene

Variant ID Type Subtype PubMed ID
nsv831926 CNV Gain+Loss 17160897
dgv149e1 CNV Complex 17122850

Relevant External Links for SNORD47 Gene

HapMap Linkage Disequilibrium report
SNORD47

No data available for Sequence variations from dbSNP and Humsavar for SNORD47 Gene

Disorders for SNORD47 Gene

No disorders were found for SNORD47 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD47 Gene

Publications for SNORD47 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD47 Gene

Sources for SNORD47 Gene

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