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Aliases for SNORD43 Gene

Subcategory (RNA class) for SNORD43 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD43 Gene

  • Small Nucleolar RNA, C/D Box 43 2 3
  • RNA, U43 Small Nuclear 2 3
  • RNU43 3 6
  • U43 Small Nucleolar RNA 3
  • U43 Small Nuclear RNA 3
  • U43 SnoRNA 3
  • U43 3

External Ids for SNORD43 Gene

Previous HGNC Symbols for SNORD43 Gene

  • RNU43

Previous GeneCards Identifiers for SNORD43 Gene

  • GC22M038045
  • GC22M039708
  • GC22M039716
  • GC22M039718
  • GC22M039720
  • GC22M039722
  • GC22M039726
  • GC22M039820
  • GC22M040107

Summaries for SNORD43 Gene

Entrez Gene Summary for SNORD43 Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD43, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD43, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD43 Gene

SNORD43 (Small Nucleolar RNA, C/D Box 43) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD43 Gene

Genomics for SNORD43 Gene

Regulatory Elements for SNORD43 Gene

Genomic Location for SNORD43 Gene

Start:
39,319,050 bp from pter
End:
39,319,113 bp from pter
Size:
64 bases
Orientation:
Minus strand

Genomic View for SNORD43 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD43 Gene

Proteins for SNORD43 Gene

Post-translational modifications for SNORD43 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD43 Gene

Domains for SNORD43 Gene

Gene Families for SNORD43 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD43: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD43 Gene

Function for SNORD43 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD43 Gene

Localization for SNORD43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD43 Gene

Pathways for SNORD43 Gene

SuperPathways for SNORD43 Gene

No Data Available

Interacting Proteins for SNORD43 Gene

Gene Ontology (GO) - Biological Process for SNORD43 Gene

None

No data available for Pathways by source for SNORD43 Gene

Transcripts for SNORD43 Gene

mRNA/cDNA for SNORD43 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD43 Gene

No ASD Table

Relevant External Links for SNORD43 Gene

GeneLoc Exon Structure for
SNORD43
ECgene alternative splicing isoforms for
SNORD43

Expression for SNORD43 Gene

mRNA expression in normal human tissues for SNORD43 Gene

genes like me logo Genes that share expressions with SNORD43: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD43 Gene

Orthologs for SNORD43 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD43 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord43 16
cow
(Bos Taurus)
Mammalia SNORD43 36
  • 89 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD43 36
  • 92 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD43 36
  • 59 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORD43 36
  • 100 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD43 36
  • 58 (a)
OneToMany
Species with no ortholog for SNORD43:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD43 Gene

ENSEMBL:
Gene Tree for SNORD43 (if available)
TreeFam:
Gene Tree for SNORD43 (if available)

Paralogs for SNORD43 Gene

No data available for Paralogs for SNORD43 Gene

Variants for SNORD43 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD43 Gene

Variant ID Type Subtype PubMed ID
nsv834198 CNV Loss 17160897

Relevant External Links for SNORD43 Gene

HapMap Linkage Disequilibrium report
SNORD43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD43 Gene

Disorders for SNORD43 Gene

No disorders were found for SNORD43 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD43 Gene

Publications for SNORD43 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  2. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S. … Simonic T. (Biochim. Biophys. Acta 2000) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD43 Gene

Sources for SNORD43 Gene

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