Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD42B Gene

Subcategory (RNA class) for SNORD42B Gene

snoRNA

Quality Score for this RNA gene is

11.2

Aliases for SNORD42B Gene

  • Small Nucleolar RNA, C/D Box 42B 2 3
  • RNA, U42B Small Nucleolar 2 3
  • U42B Small Nucleolar RNA 3
  • U42B SnoRNA 3
  • RNU42B 3
  • U42B 3

External Ids for SNORD42B Gene

ORGUL Members for SNORD42B Gene

Previous HGNC Symbols for SNORD42B Gene

  • RNU42B

Previous GeneCards Identifiers for SNORD42B Gene

  • GC17P024091
  • GC17P024096
  • GC17P024100
  • GC17P024104
  • GC17P024108
  • GC17P024112
  • GC17P024116
  • GC17P024120
  • GC17P027047
  • GC17P023256

Summaries for SNORD42B Gene

GeneCards Summary for SNORD42B Gene

SNORD42B (Small Nucleolar RNA, C/D Box 42B) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORD42B Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

  • Small nucleolar RNA SNORD42: snoRNA U42 is found in intron 3 of the ribosomal protein L23a (RPL23a) gene in humans and is also present in mice. U42 is a member of the C/D class of snoRNA which contain C (UGAUGA) and D (CUGA) box motifs. Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. Although the selection of the target nucleotide requires the antisense element and the conserved box D or D' of the snoRNA, the methyltransferase activity is supposed to reside in one of the protein components [1].

View fRNAdb secondary structures for SNORD42B

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD42B Gene

Genomics for SNORD42B Gene

Regulatory Elements for SNORD42B Gene

Genomic Location for SNORD42B Gene

Start:
28,720,550 bp from pter
End:
28,720,616 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD42B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD42B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD42B Gene

ORGUL Member Location for SNORD42B Gene

ORGUL Member Location for SNORD42B gene

Proteins for SNORD42B Gene

Post-translational modifications for SNORD42B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD42B Gene

Domains for SNORD42B Gene

Gene Families for SNORD42B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD42B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD42B Gene

Function for SNORD42B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD42B Gene

Localization for SNORD42B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD42B Gene

Pathways for SNORD42B Gene

SuperPathways for SNORD42B Gene

No Data Available

Interacting Proteins for SNORD42B Gene

Gene Ontology (GO) - Biological Process for SNORD42B Gene

None

No data available for Pathways by source for SNORD42B Gene

Transcripts for SNORD42B Gene

fRNAdb Secondary structures for SNORD42B Gene

  • FR235088

mRNA/cDNA for SNORD42B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD42B Gene

No ASD Table

Relevant External Links for SNORD42B Gene

GeneLoc Exon Structure for
SNORD42B
ECgene alternative splicing isoforms for
SNORD42B

Expression for SNORD42B Gene

mRNA expression in normal human tissues for SNORD42B Gene

genes like me logo Genes that share expressions with SNORD42B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD42B Gene

Orthologs for SNORD42B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD42B Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord42b 16
Snord42b 36
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD42 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD42 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD42 36
  • 75 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD42 36
  • 75 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORD42 36
  • 100 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD42 36
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD42 36
  • 74 (a)
OneToMany
Species with no ortholog for SNORD42B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD42B Gene

ENSEMBL:
Gene Tree for SNORD42B (if available)
TreeFam:
Gene Tree for SNORD42B (if available)

Paralogs for SNORD42B Gene

No data available for Paralogs for SNORD42B Gene

Variants for SNORD42B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD42B Gene

Variant ID Type Subtype PubMed ID
nsv908028 CNV Loss 21882294

Relevant External Links for SNORD42B Gene

HapMap Linkage Disequilibrium report
SNORD42B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD42B Gene

Disorders for SNORD42B Gene

No disorders were found for SNORD42B Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD42B Gene

Publications for SNORD42B Gene

  1. Cloning, sequencing, gene organization, and localization of the human ribosomal protein RPL23A gene. (PMID: 9417910) Fan W. … Lennon G. (Genomics 1997) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD42B Gene

Sources for SNORD42B Gene

Back to Top

Content