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Aliases for SNORD3P1 Gene

Subcategory (RNA class) for SNORD3P1 Gene

snoRNA

Aliases for SNORD3P1 Gene

  • Small Nucleolar RNA, C/D Box 3 Pseudogene 1 2 3
  • RNA, U3 Small Nucleolar Pseudogene 1 2 3
  • U3 3 5
  • RNA, U3 Small Nuclear Pseudogene 1 3
  • Small Nucleolar RNA U3 5
  • RNU3P1 3

External Ids for SNORD3P1 Gene

ORGUL Members for SNORD3P1 Gene

Previous HGNC Symbols for SNORD3P1 Gene

  • RNU3P1

Summaries for SNORD3P1 Gene

GeneCards Summary for SNORD3P1 Gene

SNORD3P1 (Small Nucleolar RNA, C/D Box 3 Pseudogene 1) is a Pseudogene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3P1 Gene

Genomics for SNORD3P1 Gene

Regulatory Elements for SNORD3P1 Gene

Enhancers for SNORD3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G058228 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12 +531.4 531416 2.3 HDGF PKNOX1 FOXA2 CREB3L1 ARNT ZNF766 CBX5 FOS JUNB REST LOC101928725 MINDY2 SNORD3P1 LIPC GC15M058232 RPL28P4
GH15G058457 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +301.6 301603 4.0 HDGF FOXA2 PKNOX1 ARNT AGO1 ARID4B SIN3A DMAP1 FEZF1 YY1 LIPC ADAM10 AQP9 SNORD3P1 LOC101928725 MINDY2 SLTM ENSG00000277790 ALDH1A2
GH15G058525 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +233.5 233517 3.9 ZFP64 ARID4B DMAP1 THRB RAD21 RARA CREM PPARG NR2F2 KAT8 LIPC SNORD3P1 LOC101928725 MINDY2 AQP9 RNF111 ADAM10 SLTM LOC101928668 PIR52724
GH15G058438 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +319.7 319681 5.1 BRCA1 THRB RAD21 RARA YY1 GATA2 FOS SMARCC1 CEBPB REST LIPC MINDY2 LOC101928725 SNORD3P1 ENSG00000277229
GH15G058864 1.6 FANTOM5 Ensembl ENCODE 10.7 -105.1 -105066 3.3 PKNOX1 FOXA2 ATF1 ARNT ARID4B SIN3A DMAP1 BRCA1 ZNF48 DEK MINDY2 SLTM ENSG00000225798 LOC101928725 SNORD3P1 ENSG00000259353 RNF111 ADAM10 RPL21P14
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD3P1 Gene

Chromosome:
15
Start:
58,760,466 bp from pter
End:
58,760,681 bp from pter
Size:
216 bases
Orientation:
Minus strand

Genomic View for SNORD3P1 Gene

Genes around SNORD3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3P1 Gene

Proteins for SNORD3P1 Gene

Post-translational modifications for SNORD3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3P1 Gene

Domains & Families for SNORD3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3P1 Gene

Function for SNORD3P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3P1 Gene

Localization for SNORD3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3P1 Gene

Pathways & Interactions for SNORD3P1 Gene

SuperPathways for SNORD3P1 Gene

No Data Available

Interacting Proteins for SNORD3P1 Gene

Gene Ontology (GO) - Biological Process for SNORD3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD3P1 Gene

Transcripts for SNORD3P1 Gene

mRNA/cDNA for SNORD3P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3P1 Gene

No ASD Table

Relevant External Links for SNORD3P1 Gene

GeneLoc Exon Structure for
SNORD3P1
ECgene alternative splicing isoforms for
SNORD3P1

Expression for SNORD3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD3P1 Gene:

SNORD3P1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD3P1 Gene

Orthologs for SNORD3P1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U3 35
  • 99 (a)
OneToOne
Species where no ortholog for SNORD3P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3P1 Gene

ENSEMBL:
Gene Tree for SNORD3P1 (if available)
TreeFam:
Gene Tree for SNORD3P1 (if available)

Paralogs for SNORD3P1 Gene

No data available for Paralogs for SNORD3P1 Gene

Variants for SNORD3P1 Gene

Relevant External Links for SNORD3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3P1 Gene

Disorders for SNORD3P1 Gene

No disorders were found for SNORD3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD3P1 Gene

Publications for SNORD3P1 Gene

  1. Genes for human U3 small nucleolar RNA contain highly conserved flanking sequences. (PMID: 2719960) Yuan Y. … Reddy R. (Biochim. Biophys. Acta 1989) 2 3 64

Products for SNORD3P1 Gene

Sources for SNORD3P1 Gene

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