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Aliases for SNORD3D Gene

Subcategory (RNA class) for SNORD3D Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3D Gene

  • Small Nucleolar RNA, C/D Box 3D 2 3 5
  • U3-4 3

External Ids for SNORD3D Gene

ORGUL Members for SNORD3D Gene

Previous GeneCards Identifiers for SNORD3D Gene

  • GC17U900824
  • GC17M018959
  • GC17M019015

Summaries for SNORD3D Gene

GeneCards Summary for SNORD3D Gene

SNORD3D (Small Nucleolar RNA, C/D Box 3D) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3D Gene

Genomics for SNORD3D Gene

Regulatory Elements for SNORD3D Gene

Enhancers for SNORD3D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F019111 0.9 ENCODE 0.8 +0.8 826 1.6 PKNOX1 SIN3A BMI1 ZEB1 ZNF121 GLIS2 ZNF366 FOS BCLAF1 CREM SMCR8 LOC102724624 FOXO3B ENSG00000262202 GC17M019113 SNORD3D GC17P019094
GH17F019108 0.8 Ensembl 0.8 +3.8 3836 0.8 HDAC1 LEF1 ESRRA CREB3L1 TAL1 ETV1 NCOR1 TRIM24 HES1 BHLHE40 ENSG00000262202 GC17M019113 SNORD3D GC17P019094
GH17F019121 0.6 Ensembl 0.4 -9.2 -9165 0.8 SCRT1 SCRT2 ZBTB33 ZNF600 ZNF384 ENSG00000262202 GRAPL GC17M019113 SNORD3D
GH17F019118 0.6 Ensembl 0.4 -6.3 -6265 0.6 ATF1 L3MBTL2 NRF1 SP2 ELF1 ZIC2 ZBTB33 ZFX ENSG00000262202 GRAPL GC17M019113 SNORD3D
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD3D on UCSC Golden Path with GeneCards custom track

Promoters for SNORD3D Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001342371 636 2801 PKNOX1 SIN3A BMI1 ZEB1 ZNF121 GLIS2 ZNF366 FOS BCLAF1 CREM

Genomic Location for SNORD3D Gene

Chromosome:
17
Start:
19,112,420 bp from pter
End:
19,112,636 bp from pter
Size:
217 bases
Orientation:
Minus strand

Genomic View for SNORD3D Gene

Genes around SNORD3D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3D Gene

Proteins for SNORD3D Gene

Post-translational modifications for SNORD3D Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3D Gene

Domains & Families for SNORD3D Gene

Gene Families for SNORD3D Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD3D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3D Gene

Function for SNORD3D Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3D Gene

Localization for SNORD3D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3D Gene

Pathways & Interactions for SNORD3D Gene

SuperPathways for SNORD3D Gene

No Data Available

Interacting Proteins for SNORD3D Gene

Gene Ontology (GO) - Biological Process for SNORD3D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD3D Gene

Transcripts for SNORD3D Gene

mRNA/cDNA for SNORD3D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3D Gene

No ASD Table

Relevant External Links for SNORD3D Gene

GeneLoc Exon Structure for
SNORD3D
ECgene alternative splicing isoforms for
SNORD3D

Expression for SNORD3D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD3D Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3D Gene

This gene is overexpressed in Testis (x14.4) and Skin - Not Sun Exposed (Suprapubic) (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of SNORD3D Gene:

SNORD3D
genes like me logo Genes that share expression patterns with SNORD3D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD3D Gene

Orthologs for SNORD3D Gene

Evolution for SNORD3D Gene

ENSEMBL:
Gene Tree for SNORD3D (if available)
TreeFam:
Gene Tree for SNORD3D (if available)

No data available for Orthologs for SNORD3D Gene

Paralogs for SNORD3D Gene

No data available for Paralogs for SNORD3D Gene

Variants for SNORD3D Gene

Sequence variations from dbSNP and Humsavar for SNORD3D Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1055350 -- 19,112,335(-) AATGT(A/C)GCGAG downstream-variant-500B
rs1055351 -- 19,112,265(-) TTAAT(A/T)TTAGT downstream-variant-500B
rs113732691 -- 19,113,298(+) TTAAC(A/C)ATTTT upstream-variant-2KB
rs1558929 -- 19,112,584(-) TTTCT(C/G/T)TGAAC nc-transcript-variant
rs16942268 -- 19,112,068(-) CAACA(A/T)CTGCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD3D Gene

Variant ID Type Subtype PubMed ID
nsv9504 CNV gain+loss 18304495
nsv978479 CNV duplication 23825009
nsv833391 CNV loss 17160897
nsv7291 OTHER inversion 18451855
nsv574555 CNV loss 21841781
nsv428336 CNV gain+loss 18775914
nsv2001 CNV deletion 18451855
nsv1061317 CNV gain 25217958
esv3892976 CNV loss 25118596
esv3892975 CNV loss 25118596
esv33572 CNV gain 17666407
esv3337010 OTHER inversion 20981092
esv2763157 CNV loss 21179565
esv2758678 CNV gain+loss 17122850
esv25927 CNV gain+loss 19812545
dgv895e212 CNV loss 25503493
dgv5494n54 CNV loss 21841781
dgv5493n54 CNV loss 21841781
dgv5492n54 CNV loss 21841781
dgv3116n100 CNV gain 25217958

Relevant External Links for SNORD3D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD3D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD3D Gene

Disorders for SNORD3D Gene

No disorders were found for SNORD3D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD3D Gene

Publications for SNORD3D Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3 64

Products for SNORD3D Gene

Sources for SNORD3D Gene

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