Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD3D Gene

Subcategory (RNA class) for SNORD3D Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3D Gene

  • Small Nucleolar RNA, C/D Box 3D 2 3
  • U3-4 3

External Ids for SNORD3D Gene

ORGUL Members for SNORD3D Gene

Summaries for SNORD3D Gene

GeneCards Summary for SNORD3D Gene

SNORD3D (Small Nucleolar RNA, C/D Box 3D) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3D Gene

Genomics for SNORD3D Gene

Genomic Location for SNORD3D Gene

Start:
19,112,419 bp from pter
End:
19,112,636 bp from pter
Size:
218 bases
Orientation:
Minus strand

Genomic View for SNORD3D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD3D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3D Gene

Regulatory Elements for SNORD3D Gene

Proteins for SNORD3D Gene

Post-translational modifications for SNORD3D Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3D Gene

Domains for SNORD3D Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SNORD3D Gene

Function for SNORD3D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD3D Gene

Localization for SNORD3D Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD3D Gene

Pathways for SNORD3D Gene

SuperPathways for SNORD3D Gene

No Data Available

Interacting Proteins for SNORD3D Gene

Gene Ontology (GO) - Biological Process for SNORD3D Gene

None

No data available for Pathways by source for SNORD3D Gene

Transcripts for SNORD3D Gene

mRNA/cDNA for SNORD3D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3D Gene

No ASD Table

Relevant External Links for SNORD3D Gene

GeneLoc Exon Structure for
SNORD3D
ECgene alternative splicing isoforms for
SNORD3D

Expression for SNORD3D Gene

mRNA expression in normal human tissues for SNORD3D Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3D Gene

This gene is overexpressed in Testis (14.4) and Skin - Not Sun Exposed (Suprapubic) (4.6).
genes like me logo Genes that share expressions with SNORD3D: view

Orthologs for SNORD3D Gene

Evolution for SNORD3D Gene

ENSEMBL:
Gene Tree for SNORD3D (if available)
TreeFam:
Gene Tree for SNORD3D (if available)

No data available for Orthologs for SNORD3D Gene

Paralogs for SNORD3D Gene

No data available for Paralogs for SNORD3D Gene

Variants for SNORD3D Gene

Sequence variations from dbSNP and Humsavar for SNORD3D Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs1055350 -- 19,112,335(-) AATGT(A/C)GCGAG downstream-variant-500B
rs62068866 -- 19,112,633(+) TATAG(C/T)CTTAA nc-transcript-variant
rs76088605 -- 19,112,584(+) GTTCA(A/G)AGAAA nc-transcript-variant
rs79468854 -- 19,112,559(+) CCTCG(G/T)GGTTT nc-transcript-variant
rs113732691 -- 19,113,298(+) TTAAC(A/C)ATTTT upstream-variant-2KB

Relevant External Links for SNORD3D Gene

HapMap Linkage Disequilibrium report
SNORD3D

No data available for Structural Variations from Database of Genomic Variants (DGV) for SNORD3D Gene

Disorders for SNORD3D Gene

No disorders were found for SNORD3D Gene.

No data available for UniProtKB/Swiss-Prot for SNORD3D Gene

Publications for SNORD3D Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3

Products for SNORD3D Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD3D
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD3D
    • Block miRNA regulation of SNORD3D using miScript Target Protectors

    Sources for SNORD3D Gene

    Back to Top

    Content