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Aliases for SNORD3D Gene

Subcategory (RNA class) for SNORD3D Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3D Gene

  • Small Nucleolar RNA, C/D Box 3D 2 3 5
  • U3-4 3

External Ids for SNORD3D Gene

ORGUL Members for SNORD3D Gene

Previous GeneCards Identifiers for SNORD3D Gene

  • GC17U900824
  • GC17M018959
  • GC17M019015

Summaries for SNORD3D Gene

GeneCards Summary for SNORD3D Gene

SNORD3D (Small Nucleolar RNA, C/D Box 3D) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3D Gene

Genomics for SNORD3D Gene

Regulatory Elements for SNORD3D Gene

Genomic Location for SNORD3D Gene

Chromosome:
17
Start:
19,112,420 bp from pter
End:
19,112,636 bp from pter
Size:
217 bases
Orientation:
Minus strand

Genomic View for SNORD3D Gene

Genes around SNORD3D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3D Gene

Proteins for SNORD3D Gene

Post-translational modifications for SNORD3D Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3D Gene

Domains & Families for SNORD3D Gene

Gene Families for SNORD3D Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD3D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3D Gene

Function for SNORD3D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3D Gene

Localization for SNORD3D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3D Gene

Pathways & Interactions for SNORD3D Gene

SuperPathways for SNORD3D Gene

No Data Available

Interacting Proteins for SNORD3D Gene

Gene Ontology (GO) - Biological Process for SNORD3D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD3D Gene

Drugs & Compounds for SNORD3D Gene

No Compound Related Data Available

Transcripts for SNORD3D Gene

mRNA/cDNA for SNORD3D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3D Gene

No ASD Table

Relevant External Links for SNORD3D Gene

GeneLoc Exon Structure for
SNORD3D
ECgene alternative splicing isoforms for
SNORD3D

Expression for SNORD3D Gene

mRNA expression in normal human tissues for SNORD3D Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3D Gene

This gene is overexpressed in Testis (x14.4) and Skin - Not Sun Exposed (Suprapubic) (x4.6).
genes like me logo Genes that share expression patterns with SNORD3D: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD3D Gene

Orthologs for SNORD3D Gene

Evolution for SNORD3D Gene

ENSEMBL:
Gene Tree for SNORD3D (if available)
TreeFam:
Gene Tree for SNORD3D (if available)

No data available for Orthologs for SNORD3D Gene

Paralogs for SNORD3D Gene

No data available for Paralogs for SNORD3D Gene

Variants for SNORD3D Gene

Sequence variations from dbSNP and Humsavar for SNORD3D Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1055350 -- 19,112,335(-) AATGT(A/C)GCGAG downstream-variant-500B
rs62068866 -- 19,112,633(+) TATAG(C/G/T)CTTAA nc-transcript-variant
rs76088605 -- 19,112,584(+) GTTCA(A/C/G)AGAAA nc-transcript-variant
rs79468854 -- 19,112,559(+) CCTCG(C/G/T)GGTTT nc-transcript-variant
rs113732691 -- 19,113,298(+) TTAAC(A/C)ATTTT upstream-variant-2KB

Relevant External Links for SNORD3D Gene

HapMap Linkage Disequilibrium report
SNORD3D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3D Gene

Disorders for SNORD3D Gene

No disorders were found for SNORD3D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD3D Gene

Publications for SNORD3D Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3 67

Products for SNORD3D Gene

Sources for SNORD3D Gene

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