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Aliases for SNORD3C Gene

Subcategory (RNA class) for SNORD3C Gene


Quality Score for this RNA gene is


Aliases for SNORD3C Gene

  • Small Nucleolar RNA, C/D Box 3C 2 3 5
  • U3-3 3

External Ids for SNORD3C Gene

ORGUL Members for SNORD3C Gene

Previous GeneCards Identifiers for SNORD3C Gene

  • GC17U900798
  • GC17M019034
  • GC17M019093

Summaries for SNORD3C Gene

GeneCards Summary for SNORD3C Gene

SNORD3C (Small Nucleolar RNA, C/D Box 3C) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are RNA transport and Ribosome biogenesis in eukaryotes.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3C Gene

Genomics for SNORD3C Gene

Regulatory Elements for SNORD3C Gene

Enhancers for SNORD3C Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNORD3C on UCSC Golden Path with GeneCards custom track

Promoters for SNORD3C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNORD3C on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD3C Gene

19,189,665 bp from pter
19,190,245 bp from pter
581 bases
Minus strand

Genomic View for SNORD3C Gene

Genes around SNORD3C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3C Gene

Proteins for SNORD3C Gene

Post-translational modifications for SNORD3C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3C Gene

Domains & Families for SNORD3C Gene

Gene Families for SNORD3C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD3C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3C Gene

Function for SNORD3C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3C Gene

Localization for SNORD3C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3C Gene

Pathways & Interactions for SNORD3C Gene

genes like me logo Genes that share pathways with SNORD3C: view

Pathways by source for SNORD3C Gene

2 KEGG pathways for SNORD3C Gene

Interacting Proteins for SNORD3C Gene

Gene Ontology (GO) - Biological Process for SNORD3C Gene


No data available for SIGNOR curated interactions for SNORD3C Gene

Drugs & Compounds for SNORD3C Gene

No Compound Related Data Available

Transcripts for SNORD3C Gene

mRNA/cDNA for SNORD3C Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3C Gene

No ASD Table

Relevant External Links for SNORD3C Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD3C Gene

mRNA expression in normal human tissues for SNORD3C Gene

genes like me logo Genes that share expression patterns with SNORD3C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD3C Gene

Orthologs for SNORD3C Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3C Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U3 36
  • 93 (a)
U3 36
  • 94 (a)
Species with no ortholog for SNORD3C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3C Gene

Gene Tree for SNORD3C (if available)
Gene Tree for SNORD3C (if available)

Paralogs for SNORD3C Gene

No data available for Paralogs for SNORD3C Gene

Variants for SNORD3C Gene

Sequence variations from dbSNP and Humsavar for SNORD3C Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs4924790 -- 19,189,710(+) CTGCA(A/C)TCCAG downstream-variant-500B
rs62068870 -- 19,189,943(+) TTCTC(A/G)CGACA downstream-variant-500B
rs77500045 -- 19,190,257(-) TGTGC(A/G)AGGAG upstream-variant-2KB
rs200289301 -- 19,190,105(+) CAGTT(A/G)CAGCC nc-transcript-variant
rs200819905 -- 19,189,994(+) TACGA(A/G)CTAGT downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for SNORD3C Gene

Disorders for SNORD3C Gene

No disorders were found for SNORD3C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD3C Gene

Publications for SNORD3C Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3 67
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3
  3. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 3

Products for SNORD3C Gene

Sources for SNORD3C Gene