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Aliases for SNORD3C Gene

Subcategory (RNA class) for SNORD3C Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3C Gene

  • Small Nucleolar RNA, C/D Box 3C 2 3
  • U3-3 3

External Ids for SNORD3C Gene

ORGUL Members for SNORD3C Gene

Summaries for SNORD3C Gene

GeneCards Summary for SNORD3C Gene

SNORD3C (Small Nucleolar RNA, C/D Box 3C) is a RNA Gene, and belongs to lncRNA RNA class. Diseases associated with SNORD3C include multiple myeloma. Among its related pathways are RNA transport and Ribosome biogenesis in eukaryotes.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3C Gene

Genomics for SNORD3C Gene

Genomic Location for SNORD3C Gene

Start:
19,189,665 bp from pter
End:
19,190,245 bp from pter
Size:
581 bases
Orientation:
Minus strand

Genomic View for SNORD3C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD3C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3C Gene

No data available for Regulatory Elements for SNORD3C Gene

Proteins for SNORD3C Gene

Post-translational modifications for SNORD3C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3C Gene

Domains for SNORD3C Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SNORD3C Gene

Function for SNORD3C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD3C Gene

Localization for SNORD3C Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD3C Gene

Pathways for SNORD3C Gene

genes like me logo Genes that share pathways with SNORD3C: view

Pathways by source for SNORD3C Gene

2 KEGG pathways for SNORD3C Gene

Interacting Proteins for SNORD3C Gene

Gene Ontology (GO) - Biological Process for SNORD3C Gene

None

Transcripts for SNORD3C Gene

mRNA/cDNA for SNORD3C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3C Gene

No ASD Table

Relevant External Links for SNORD3C Gene

GeneLoc Exon Structure for
SNORD3C
ECgene alternative splicing isoforms for
SNORD3C

Expression for SNORD3C Gene

mRNA expression in normal human tissues for SNORD3C Gene

genes like me logo Genes that share expressions with SNORD3C: view

Orthologs for SNORD3C Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U3 37
  • 93 (a)
ManyToMany
U3 37
  • 94 (a)
ManyToMany
Species with no ortholog for SNORD3C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3C Gene

ENSEMBL:
Gene Tree for SNORD3C (if available)
TreeFam:
Gene Tree for SNORD3C (if available)

Paralogs for SNORD3C Gene

No data available for Paralogs for SNORD3C Gene

Variants for SNORD3C Gene

Sequence variations from dbSNP and Humsavar for SNORD3C Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs62068870 -- 19,189,943(+) TTCTC(A/G)CGACA downstream-variant-500B
rs77500045 -- 19,190,257(-) TGTGC(A/G)AGGAG upstream-variant-2KB
rs199552709 -- 19,189,989(+) GAGTT(C/T)ACGAG downstream-variant-500B
rs199567185 -- 19,190,129(+) AAGCC(A/G)GCTTC nc-transcript-variant
rs199632583 -- 19,190,118(+) GCAAC(A/G)CCAGA nc-transcript-variant

Relevant External Links for SNORD3C Gene

HapMap Linkage Disequilibrium report
SNORD3C

No data available for Structural Variations from Database of Genomic Variants (DGV) for SNORD3C Gene

Disorders for SNORD3C Gene

(1) MalaCards Diseases for SNORD3C Gene

Search for SNORD3C Gene in MalaCards »
genes like me logo Genes that share disorders with SNORD3C: view

No data available for UniProtKB/Swiss-Prot for SNORD3C Gene

Publications for SNORD3C Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3
  3. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 3

Products for SNORD3C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD3C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD3C
    • Block miRNA regulation of SNORD3C using miScript Target Protectors

    Sources for SNORD3C Gene

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