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Aliases for SNORD3C Gene

Subcategory (RNA class) for SNORD3C Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3C Gene

  • Small Nucleolar RNA, C/D Box 3C 2 3 5
  • U3-3 3

External Ids for SNORD3C Gene

ORGUL Members for SNORD3C Gene

Previous GeneCards Identifiers for SNORD3C Gene

  • GC17U900798
  • GC17M019034
  • GC17M019093

Summaries for SNORD3C Gene

GeneCards Summary for SNORD3C Gene

SNORD3C (Small Nucleolar RNA, C/D Box 3C) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Ribosome biogenesis in eukaryotes and RNA transport.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3C Gene

Genomics for SNORD3C Gene

Regulatory Elements for SNORD3C Gene

Enhancers for SNORD3C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F019188 0.7 ENCODE 0.8 +2.1 2133 0.1 MTA2 KLF17 BMI1 POLR2H ZNF318 ZNF316 POLR2A NCOR1 TARDBP NBN GC17P019191 GC17M019194 SNORD3A SNORD3C
GH17F019191 0.2 Ensembl 0.8 -1.5 -1456 0.2 GC17M019194 SNORD3C ENSG00000236022
GH17F019196 0.2 Ensembl 0.4 -6.5 -6456 1.4 GC17M019194 ENSG00000236022 SNORD3C
GH17F019202 0.2 Ensembl 0.4 -13.0 -12956 2.0 ENSG00000236022 GC17M019194 SNORD3C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD3C on UCSC Golden Path with GeneCards custom track

Promoters for SNORD3C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001805724 1045 4001 MTA2 KLF17 BMI1 ZIC2 ZNF664 POLR2H ZNF318 ZNF316 NCOR1 POLR2A

Genomic Location for SNORD3C Gene

Chromosome:
17
Start:
19,189,665 bp from pter
End:
19,190,245 bp from pter
Size:
581 bases
Orientation:
Minus strand

Genomic View for SNORD3C Gene

Genes around SNORD3C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3C Gene

Proteins for SNORD3C Gene

Post-translational modifications for SNORD3C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3C Gene

Domains & Families for SNORD3C Gene

Gene Families for SNORD3C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD3C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3C Gene

Function for SNORD3C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3C Gene

Localization for SNORD3C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3C Gene

Pathways & Interactions for SNORD3C Gene

genes like me logo Genes that share pathways with SNORD3C: view

Pathways by source for SNORD3C Gene

2 KEGG pathways for SNORD3C Gene

Interacting Proteins for SNORD3C Gene

Gene Ontology (GO) - Biological Process for SNORD3C Gene

None

No data available for SIGNOR curated interactions for SNORD3C Gene

Transcripts for SNORD3C Gene

mRNA/cDNA for SNORD3C Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3C Gene

No ASD Table

Relevant External Links for SNORD3C Gene

GeneLoc Exon Structure for
SNORD3C
ECgene alternative splicing isoforms for
SNORD3C

Expression for SNORD3C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD3C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD3C Gene:

SNORD3C
genes like me logo Genes that share expression patterns with SNORD3C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD3C Gene

Orthologs for SNORD3C Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U3 35 35
  • 93 (a)
ManyToMany
Species where no ortholog for SNORD3C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3C Gene

ENSEMBL:
Gene Tree for SNORD3C (if available)
TreeFam:
Gene Tree for SNORD3C (if available)

Paralogs for SNORD3C Gene

No data available for Paralogs for SNORD3C Gene

Variants for SNORD3C Gene

Sequence variations from dbSNP and Humsavar for SNORD3C Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs199552709 -- 19,189,989(+) GAGTT(C/T)ACGAG downstream-variant-500B
rs199567185 -- 19,190,129(+) AAGCC(A/G)GCTTC nc-transcript-variant
rs199632583 -- 19,190,118(+) GCAAC(A/G)CCAGA nc-transcript-variant
rs199761305 -- 19,190,168(+) CCTCG(G/T)GGTTT nc-transcript-variant
rs199800487 -- 19,190,003(+) GTCTC(C/T)GTCAT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD3C Gene

Variant ID Type Subtype PubMed ID
nsv9504 CNV gain+loss 18304495
nsv833393 CNV gain+loss 17160897
nsv833391 CNV loss 17160897
nsv7291 OTHER inversion 18451855
nsv574555 CNV loss 21841781
nsv428336 CNV gain+loss 18775914
nsv2001 CNV deletion 18451855
nsv1061317 CNV gain 25217958
esv3892975 CNV loss 25118596
esv33572 CNV gain 17666407
esv2763157 CNV loss 21179565
esv2758678 CNV gain+loss 17122850
esv25927 CNV gain+loss 19812545
dgv895e212 CNV loss 25503493
dgv5494n54 CNV loss 21841781
dgv5493n54 CNV loss 21841781
dgv3116n100 CNV gain 25217958

Relevant External Links for SNORD3C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD3C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD3C Gene

Disorders for SNORD3C Gene

No disorders were found for SNORD3C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD3C Gene

Publications for SNORD3C Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3 64
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3 64
  3. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 3 64

Products for SNORD3C Gene

Sources for SNORD3C Gene

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