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Aliases for SNORD3B-2 Gene

Subcategory (RNA class) for SNORD3B-2 Gene


Quality Score for this RNA gene is


Aliases for SNORD3B-2 Gene

  • Small Nucleolar RNA, C/D Box 3B-2 2 3 5
  • U3-2B 3
  • U3b2 3

External Ids for SNORD3B-2 Gene

ORGUL Members for SNORD3B-2 Gene

Previous GeneCards Identifiers for SNORD3B-2 Gene

  • GC17U900820
  • GC17M018910
  • GC17M018967

Summaries for SNORD3B-2 Gene

GeneCards Summary for SNORD3B-2 Gene

SNORD3B-2 (Small Nucleolar RNA, C/D Box 3B-2) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Ribosome biogenesis in eukaryotes and RNA transport.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3B-2 Gene

Genomics for SNORD3B-2 Gene

Regulatory Elements for SNORD3B-2 Gene

Enhancers for SNORD3B-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SNORD3B-2 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD3B-2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SNORD3B-2 Gene

19,063,346 bp from pter
19,064,136 bp from pter
791 bases
Minus strand

Genomic View for SNORD3B-2 Gene

Genes around SNORD3B-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3B-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3B-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3B-2 Gene

Proteins for SNORD3B-2 Gene

Post-translational modifications for SNORD3B-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3B-2 Gene

Domains & Families for SNORD3B-2 Gene

Gene Families for SNORD3B-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD3B-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3B-2 Gene

Function for SNORD3B-2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3B-2 Gene

Localization for SNORD3B-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3B-2 Gene

Pathways & Interactions for SNORD3B-2 Gene

genes like me logo Genes that share pathways with SNORD3B-2: view

Pathways by source for SNORD3B-2 Gene

2 KEGG pathways for SNORD3B-2 Gene

Interacting Proteins for SNORD3B-2 Gene

Gene Ontology (GO) - Biological Process for SNORD3B-2 Gene


No data available for SIGNOR curated interactions for SNORD3B-2 Gene

Drugs & Compounds for SNORD3B-2 Gene

No Compound Related Data Available

Transcripts for SNORD3B-2 Gene

mRNA/cDNA for SNORD3B-2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3B-2 Gene

No ASD Table

Relevant External Links for SNORD3B-2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD3B-2 Gene

mRNA expression in normal human tissues for SNORD3B-2 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3B-2 Gene

This gene is overexpressed in Testis (x5.2) and Skin - Not Sun Exposed (Suprapubic) (x5.0).
genes like me logo Genes that share expression patterns with SNORD3B-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD3B-2 Gene

Orthologs for SNORD3B-2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3B-2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U3 35
  • 93 (a)
U3 35
  • 94 (a)
Species where no ortholog for SNORD3B-2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3B-2 Gene

Gene Tree for SNORD3B-2 (if available)
Gene Tree for SNORD3B-2 (if available)

Paralogs for SNORD3B-2 Gene

No data available for Paralogs for SNORD3B-2 Gene

Variants for SNORD3B-2 Gene

Sequence variations from dbSNP and Humsavar for SNORD3B-2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs28414876 -- 19,064,701(+) GATCA(A/G)TTACC upstream-variant-2KB
rs62068862 -- 19,063,839(+) CTACA(C/T)TGCCA downstream-variant-500B
rs62068863 -- 19,064,139(+) CTTAA(A/C/G/T)GGCCT upstream-variant-2KB
rs78457033 -- 19,063,863(-) GTTTC(C/T)GGGCT downstream-variant-500B
rs76924432 -- 19,063,817(+) CAGGA(A/G)GCGAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD3B-2 Gene

Variant ID Type Subtype PubMed ID
dgv1701e59 CNV duplication 20981092
dgv3116n100 CNV gain 25217958
dgv895e212 CNV loss 25503493
esv25927 CNV gain+loss 19812545
esv2758678 CNV gain+loss 17122850
esv33572 CNV gain 17666407
esv3431325 CNV duplication 20981092
esv3892975 CNV loss 25118596
esv3892976 CNV loss 25118596
nsv1061317 CNV gain 25217958
nsv428336 CNV gain+loss 18775914
nsv511054 OTHER complex 20534489
nsv574554 CNV loss 21841781
nsv7291 OTHER inversion 18451855
nsv833391 CNV loss 17160897
nsv9504 CNV gain+loss 18304495
nsv962450 CNV duplication 23825009
nsv978384 CNV duplication 23825009

Relevant External Links for SNORD3B-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD3B-2 Gene

Disorders for SNORD3B-2 Gene

No disorders were found for SNORD3B-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD3B-2 Gene

Publications for SNORD3B-2 Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3 65
  2. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 3 65

Products for SNORD3B-2 Gene

Sources for SNORD3B-2 Gene

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