Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD3B-1 Gene

Subcategory (RNA class) for SNORD3B-1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3B-1 Gene

  • Small Nucleolar RNA, C/D Box 3B-1 2 3
  • RNA, U3A1 Small Nucleolar, RNA, U3A1 Small Nucleolar 2 3
  • RNU3A1 3
  • U3b2 3
  • U3b1 3
  • U3a 3

External Ids for SNORD3B-1 Gene

ORGUL Members for SNORD3B-1 Gene

Previous Symbols for SNORD3B-1 Gene

  • RNU3A1

Summaries for SNORD3B-1 Gene

GeneCards Summary for SNORD3B-1 Gene

SNORD3B-1 (Small Nucleolar RNA, C/D Box 3B-1) is a RNA Gene, and belongs to lncRNA RNA class. Among its related pathways are RNA transport and Ribosome biogenesis in eukaryotes.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3B-1 Gene

Genomics for SNORD3B-1 Gene

Genomic Location for SNORD3B-1 Gene

Start:
19,061,912 bp from pter
End:
19,062,494 bp from pter
Size:
583 bases
Orientation:
Plus strand

Genomic View for SNORD3B-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD3B-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3B-1 Gene

Regulatory Elements for SNORD3B-1 Gene

Transcription factor binding sites by QIAGEN in the SNORD3B-1 gene promoter:

Proteins for SNORD3B-1 Gene

Post-translational modifications for SNORD3B-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3B-1 Gene

Domains for SNORD3B-1 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SNORD3B-1 Gene

Function for SNORD3B-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD3B-1 Gene

Localization for SNORD3B-1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD3B-1 Gene

Pathways for SNORD3B-1 Gene

genes like me logo Genes that share pathways with SNORD3B-1: view

Pathways by source for SNORD3B-1 Gene

2 KEGG pathways for SNORD3B-1 Gene

Interacting Proteins for SNORD3B-1 Gene

Gene Ontology (GO) - Biological Process for SNORD3B-1 Gene

None

Transcripts for SNORD3B-1 Gene

mRNA/cDNA for SNORD3B-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3B-1 Gene

No ASD Table

Relevant External Links for SNORD3B-1 Gene

GeneLoc Exon Structure for
SNORD3B-1
ECgene alternative splicing isoforms for
SNORD3B-1

Expression for SNORD3B-1 Gene

mRNA expression in normal human tissues for SNORD3B-1 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3B-1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (9.5) and Testis (9.0).
genes like me logo Genes that share expressions with SNORD3B-1: view

Orthologs for SNORD3B-1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3B-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U3 37
  • 93 (a)
ManyToMany
U3 37
  • 94 (a)
ManyToMany
Species with no ortholog for SNORD3B-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3B-1 Gene

ENSEMBL:
Gene Tree for SNORD3B-1 (if available)
TreeFam:
Gene Tree for SNORD3B-1 (if available)

Paralogs for SNORD3B-1 Gene

No data available for Paralogs for SNORD3B-1 Gene

Variants for SNORD3B-1 Gene

Sequence variations from dbSNP and Humsavar for SNORD3B-1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs2472700 -- 19,060,675(-) CACCA(C/T)GCCCA upstream-variant-2KB
rs7213363 -- 19,062,616(+) atgtt(A/C)gccag downstream-variant-500B
rs9748172 -- 19,060,049(+) gctcc(G/T)gacct upstream-variant-2KB
rs62066659 -- 19,062,145(+) GATGG(C/T)TCAAT downstream-variant-500B
rs62068860 -- 19,062,254(+) CGGCT(C/T)TTGGG downstream-variant-500B

Relevant External Links for SNORD3B-1 Gene

HapMap Linkage Disequilibrium report
SNORD3B-1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SNORD3B-1 Gene

Disorders for SNORD3B-1 Gene

No disorders were found for SNORD3B-1 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD3B-1 Gene

Publications for SNORD3B-1 Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3
  2. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 3

Products for SNORD3B-1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD3B-1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD3B-1
    • Block miRNA regulation of SNORD3B-1 using miScript Target Protectors

    Sources for SNORD3B-1 Gene

    Back to Top

    Content