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Aliases for SNORD3B-1 Gene

Subcategory (RNA class) for SNORD3B-1 Gene


Quality Score for this RNA gene is


Aliases for SNORD3B-1 Gene

  • Small Nucleolar RNA, C/D Box 3B-1 2 3
  • RNA, U3A1 Small Nucleolar, RNA, U3A1 Small Nucleolar 2 3
  • RNU3A1 3
  • U3b2 3
  • U3b1 3
  • U3a 3

External Ids for SNORD3B-1 Gene

ORGUL Members for SNORD3B-1 Gene

Previous HGNC Symbols for SNORD3B-1 Gene

  • RNU3A1

Previous GeneCards Identifiers for SNORD3B-1 Gene

  • GC17M018909
  • GC17U900934
  • GC17P018907
  • GC17P018965

Summaries for SNORD3B-1 Gene

GeneCards Summary for SNORD3B-1 Gene

SNORD3B-1 (Small Nucleolar RNA, C/D Box 3B-1) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are RNA transport and Ribosome biogenesis in eukaryotes.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3B-1 Gene

Genomics for SNORD3B-1 Gene

Regulatory Elements for SNORD3B-1 Gene

Transcription factor binding sites by QIAGEN in the SNORD3B-1 gene promoter:

Genomic Location for SNORD3B-1 Gene

19,061,912 bp from pter
19,062,669 bp from pter
758 bases
Plus strand

Genomic View for SNORD3B-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD3B-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3B-1 Gene

Proteins for SNORD3B-1 Gene

Post-translational modifications for SNORD3B-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3B-1 Gene

Domains & Families for SNORD3B-1 Gene

Gene Families for SNORD3B-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD3B-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3B-1 Gene

Function for SNORD3B-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3B-1 Gene

Localization for SNORD3B-1 Gene

Subcellular locations from

Jensen Localization Image for SNORD3B-1 Gene COMPARTMENTS Subcellular localization image for SNORD3B-1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORD3B-1 Gene

Pathways & Interactions for SNORD3B-1 Gene

genes like me logo Genes that share pathways with SNORD3B-1: view

Pathways by source for SNORD3B-1 Gene

2 KEGG pathways for SNORD3B-1 Gene

Interacting Proteins for SNORD3B-1 Gene

Gene Ontology (GO) - Biological Process for SNORD3B-1 Gene


No data available for SIGNOR curated interactions for SNORD3B-1 Gene

Drugs & Compounds for SNORD3B-1 Gene

No Compound Related Data Available

Transcripts for SNORD3B-1 Gene

mRNA/cDNA for SNORD3B-1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3B-1 Gene

No ASD Table

Relevant External Links for SNORD3B-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD3B-1 Gene

mRNA expression in normal human tissues for SNORD3B-1 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3B-1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x9.5) and Testis (x9.0).
genes like me logo Genes that share expression patterns with SNORD3B-1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD3B-1 Gene

Orthologs for SNORD3B-1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3B-1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U3 36
  • 93 (a)
U3 36
  • 94 (a)
Species with no ortholog for SNORD3B-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3B-1 Gene

Gene Tree for SNORD3B-1 (if available)
Gene Tree for SNORD3B-1 (if available)

Paralogs for SNORD3B-1 Gene

No data available for Paralogs for SNORD3B-1 Gene

Variants for SNORD3B-1 Gene

Sequence variations from dbSNP and Humsavar for SNORD3B-1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs2080667 -- 19,060,184(+) tgaga(A/T)ataag upstream-variant-2KB
rs2472700 -- 19,060,675(-) CACCA(C/T)GCCCA upstream-variant-2KB
rs7213363 -- 19,062,616(+) atgtt(A/C)gccag downstream-variant-500B
rs9748172 -- 19,060,049(+) gctcc(G/T)gacct upstream-variant-2KB
rs62066659 -- 19,062,145(+) GATGG(C/G/T)TCAAT downstream-variant-500B

Relevant External Links for SNORD3B-1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3B-1 Gene

Disorders for SNORD3B-1 Gene

genes like me logo Genes that share disorders with SNORD3B-1: view

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD3B-1 Gene

Publications for SNORD3B-1 Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 67
  2. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 67

Products for SNORD3B-1 Gene

Sources for SNORD3B-1 Gene

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