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Aliases for SNORD3B-1 Gene

Subcategory (RNA class) for SNORD3B-1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3B-1 Gene

  • Small Nucleolar RNA, C/D Box 3B-1 2 3
  • RNA, U3A1 Small Nucleolar, RNA, U3A1 Small Nucleolar 2 3
  • RNU3A1 3
  • U3b2 3
  • U3b1 3
  • U3a 3

External Ids for SNORD3B-1 Gene

ORGUL Members for SNORD3B-1 Gene

Previous HGNC Symbols for SNORD3B-1 Gene

  • RNU3A1

Previous GeneCards Identifiers for SNORD3B-1 Gene

  • GC17M018909
  • GC17U900934
  • GC17P018907
  • GC17P018965

Summaries for SNORD3B-1 Gene

GeneCards Summary for SNORD3B-1 Gene

SNORD3B-1 (Small Nucleolar RNA, C/D Box 3B-1) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are RNA transport and Ribosome biogenesis in eukaryotes.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3B-1 Gene

Genomics for SNORD3B-1 Gene

Regulatory Elements for SNORD3B-1 Gene

Transcription factor binding sites by QIAGEN in the SNORD3B-1 gene promoter:

Genomic Location for SNORD3B-1 Gene

Start:
19,061,912 bp from pter
End:
19,062,494 bp from pter
Size:
583 bases
Orientation:
Plus strand

Genomic View for SNORD3B-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD3B-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3B-1 Gene

Proteins for SNORD3B-1 Gene

Post-translational modifications for SNORD3B-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3B-1 Gene

Domains for SNORD3B-1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3B-1 Gene

Function for SNORD3B-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD3B-1 Gene

Localization for SNORD3B-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3B-1 Gene

Pathways for SNORD3B-1 Gene

genes like me logo Genes that share pathways with SNORD3B-1: view

Pathways by source for SNORD3B-1 Gene

2 KEGG pathways for SNORD3B-1 Gene

Interacting Proteins for SNORD3B-1 Gene

Gene Ontology (GO) - Biological Process for SNORD3B-1 Gene

None

Transcripts for SNORD3B-1 Gene

mRNA/cDNA for SNORD3B-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD3B-1
    • Block miRNA regulation of SNORD3B-1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD3B-1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3B-1 Gene

    No ASD Table

    Relevant External Links for SNORD3B-1 Gene

    GeneLoc Exon Structure for
    SNORD3B-1
    ECgene alternative splicing isoforms for
    SNORD3B-1

    Expression for SNORD3B-1 Gene

    mRNA expression in normal human tissues for SNORD3B-1 Gene

    mRNA differential expression in normal tissues according to GTEx for SNORD3B-1 Gene

    This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (9.5) and Testis (9.0).
    genes like me logo Genes that share expressions with SNORD3B-1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD3B-1 Gene

    Orthologs for SNORD3B-1 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for SNORD3B-1 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia U3 36
    • 93 (a)
    ManyToMany
    U3 36
    • 94 (a)
    ManyToMany
    Species with no ortholog for SNORD3B-1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for SNORD3B-1 Gene

    ENSEMBL:
    Gene Tree for SNORD3B-1 (if available)
    TreeFam:
    Gene Tree for SNORD3B-1 (if available)

    Paralogs for SNORD3B-1 Gene

    No data available for Paralogs for SNORD3B-1 Gene

    Variants for SNORD3B-1 Gene

    Sequence variations from dbSNP and Humsavar for SNORD3B-1 Gene

    SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
    rs2472700 -- 19,060,675(-) CACCA(C/T)GCCCA upstream-variant-2KB
    rs7213363 -- 19,062,616(+) atgtt(A/C)gccag downstream-variant-500B
    rs9748172 -- 19,060,049(+) gctcc(G/T)gacct upstream-variant-2KB
    rs62066659 -- 19,062,145(+) GATGG(C/T)TCAAT downstream-variant-500B
    rs62068860 -- 19,062,254(+) CGGCT(C/T)TTGGG downstream-variant-500B

    Relevant External Links for SNORD3B-1 Gene

    HapMap Linkage Disequilibrium report
    SNORD3B-1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SNORD3B-1 Gene

    Disorders for SNORD3B-1 Gene

    No disorders were found for SNORD3B-1 Gene.

    No data available for UniProtKB/Swiss-Prot for SNORD3B-1 Gene

    Publications for SNORD3B-1 Gene

    1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3
    2. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 3

    Products for SNORD3B-1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD3B-1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD3B-1
      • Block miRNA regulation of SNORD3B-1 using miScript Target Protectors

      Sources for SNORD3B-1 Gene

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