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Aliases for SNORD3A Gene

Subcategory (RNA class) for SNORD3A Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3A Gene

  • Small Nucleolar RNA, C/D Box 3A 2 3
  • RNU3 3 6
  • RNA, U3 Small Nucleolar 3
  • U3 3

External Ids for SNORD3A Gene

ORGUL Members for SNORD3A Gene

Summaries for SNORD3A Gene

Entrez Gene Summary for SNORD3A Gene

  • U3 RNA, an abundant small nucleolar RNA (snoRNA), is thought to play a role in the processing of ribosomal RNA precursors (Bernstein et al., 1983 [PubMed 6186397]).[supplied by OMIM, Jun 2009]

GeneCards Summary for SNORD3A Gene

SNORD3A (Small Nucleolar RNA, C/D Box 3A) is an RNA Gene, and belongs to the lncRNA class. Among its related pathways are RNA transport and Ribosome biogenesis in eukaryotes.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3A Gene

Genomics for SNORD3A Gene

Genomic Location for SNORD3A Gene

Start:
19,188,016 bp from pter
End:
19,188,714 bp from pter
Size:
699 bases
Orientation:
Plus strand

Genomic View for SNORD3A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD3A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3A Gene

No data available for Regulatory Elements for SNORD3A Gene

Proteins for SNORD3A Gene

Post-translational modifications for SNORD3A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3A Gene

Domains for SNORD3A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3A Gene

Function for SNORD3A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD3A Gene

Localization for SNORD3A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD3A Gene

Pathways for SNORD3A Gene

genes like me logo Genes that share pathways with SNORD3A: view

Pathways by source for SNORD3A Gene

2 KEGG pathways for SNORD3A Gene

Interacting Proteins for SNORD3A Gene

Gene Ontology (GO) - Biological Process for SNORD3A Gene

None

Transcripts for SNORD3A Gene

mRNA/cDNA for SNORD3A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3A Gene

No ASD Table

Relevant External Links for SNORD3A Gene

GeneLoc Exon Structure for
SNORD3A
ECgene alternative splicing isoforms for
SNORD3A

Expression for SNORD3A Gene

mRNA expression in normal human tissues for SNORD3A Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3A Gene

This gene is overexpressed in Testis (4.5).
genes like me logo Genes that share expressions with SNORD3A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD3A Gene

Orthologs for SNORD3A Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U3 36
  • 94 (a)
ManyToMany
U3 36
  • 94 (a)
ManyToMany
Species with no ortholog for SNORD3A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3A Gene

ENSEMBL:
Gene Tree for SNORD3A (if available)
TreeFam:
Gene Tree for SNORD3A (if available)

Paralogs for SNORD3A Gene

No data available for Paralogs for SNORD3A Gene

Variants for SNORD3A Gene

Sequence variations from dbSNP and Humsavar for SNORD3A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs72639203 -- 19,188,139(+) GCTTT(C/T)TGGCG nc-transcript-variant
rs111391809 -- 19,188,004(+) TGTGC(A/G)AGGAG upstream-variant-2KB
rs190586226 -- 19,188,121(+) CTCCT(C/G)AGCGT nc-transcript-variant
rs199499551 -- 19,187,831(+) AACAA(C/T)TTTTA upstream-variant-2KB
rs199585448 -- 19,188,116(+) GTTTT(C/G)TCCTG nc-transcript-variant

Relevant External Links for SNORD3A Gene

HapMap Linkage Disequilibrium report
SNORD3A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SNORD3A Gene

Disorders for SNORD3A Gene

No disorders were found for SNORD3A Gene.

No data available for UniProtKB/Swiss-Prot for SNORD3A Gene

Publications for SNORD3A Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L. … Matera A.G. (Nucleic Acids Res. 1997) 2 3
  2. PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli. (PMID: 15574332) Boulon S. … Bertrand E. (Mol. Cell 2004) 3
  3. Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex. (PMID: 15574333) Watkins N.J. … Luehrmann R. (Mol. Cell 2004) 3
  4. A weak C' box renders U3 snoRNA levels dependent on hU3-55K binding. (PMID: 21505065) Knox A.A. … Watkins N.J. (Mol. Cell. Biol. 2011) 3
  5. Substrate specificity analysis and novel substrates of the protein lysine methyltransferase NSD1. (PMID: 24412544) Kudithipudi S. … Jeltsch A. (Chem. Biol. 2014) 3

Products for SNORD3A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD3A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD3A
    • Block miRNA regulation of SNORD3A using miScript Target Protectors

    Sources for SNORD3A Gene

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