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Aliases for SNORD38D Gene

Subcategory (RNA class) for SNORD38D Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD38D Gene

  • Small Nucleolar RNA, C/D Box 38D 2 3
  • Small Nucleolar RNA SNORD38 5
  • SNORD38 5

External Ids for SNORD38D Gene

ORGUL Members for SNORD38D Gene

Previous GeneCards Identifiers for SNORD38D Gene

  • GC00U936716
  • GC08U902731

Summaries for SNORD38D Gene

GeneCards Summary for SNORD38D Gene

SNORD38D (Small Nucleolar RNA, C/D Box 38D) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD38D Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD38D Gene

Genomics for SNORD38D Gene

Regulatory Elements for SNORD38D Gene

Enhancers for SNORD38D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H039041 1.1 Ensembl ENCODE dbSUPER 12.4 -23.6 -23574 1.8 CTCF JUN ZFP37 RAD21 JUND POLR2A SMC3 HNF4A FOS ADAM32 SNORD38D ADAM9 TM2D2 ENSG00000272128 GC08M039019
GH08H039040 0.7 ENCODE dbSUPER 12.4 -22.1 -22089 0.2 ZNF585B RCOR1 TM2D2 SNORD38D ADAM9 GC08M039019 ADAM32
GH08H038995 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +17.9 17887 10.8 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ADAM32 ENSG00000253645 HTRA4 PLEKHA2 ENSG00000272128 ADAM9 SNORD38D GC08M039019
GH08H039035 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.1 -19059 5.3 FOXA2 ATF1 ARNT SIN3A YY1 ATF7 FOS DEK ZNF202 MEF2D ADAM32 ADAM9 TM2D2 ENSG00000255201 ENSG00000272128 HTRA4 TACC1 PLEKHA2 SNORD38D GC08M039019
GH08H039016 0.8 ENCODE dbSUPER 0.7 +1.5 1497 1.8 ZNF316 MAFG NFE2 EMSY MAFK NFE2L2 ADAM32 ENSG00000272128 GC08M039019 SNORD38D ADAM9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD38D on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD38D Gene

Genomic Locations for SNORD38D Gene
chr8:39,018,615-39,018,683
(GRCh38/hg38)
Size:
69 bases
Orientation:
Minus strand
chr8:38,876,134-38,876,202
(GRCh37/hg19)

Genomic View for SNORD38D Gene

Genes around SNORD38D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD38D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD38D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORD38D Gene

Proteins for SNORD38D Gene

Post-translational modifications for SNORD38D Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD38D Gene

Domains & Families for SNORD38D Gene

Gene Families for SNORD38D Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD38D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD38D Gene

Function for SNORD38D Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD38D Gene

Localization for SNORD38D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD38D Gene

Pathways & Interactions for SNORD38D Gene

SuperPathways for SNORD38D Gene

No Data Available

Interacting Proteins for SNORD38D Gene

Gene Ontology (GO) - Biological Process for SNORD38D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD38D Gene

Drugs & Compounds for SNORD38D Gene

No Compound Related Data Available

Transcripts for SNORD38D Gene

mRNA/cDNA for SNORD38D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD38D Gene

No ASD Table

Relevant External Links for SNORD38D Gene

GeneLoc Exon Structure for
SNORD38D
ECgene alternative splicing isoforms for
SNORD38D

Expression for SNORD38D Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD38D Gene

Orthologs for SNORD38D Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD38D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD38 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD38 34
  • 87 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23615 34
  • 80 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD38 34
  • 72 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD38 34
  • 65 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD38 34
  • 71 (a)
OneToMany
Species where no ortholog for SNORD38D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD38D Gene

ENSEMBL:
Gene Tree for SNORD38D (if available)
TreeFam:
Gene Tree for SNORD38D (if available)

Paralogs for SNORD38D Gene

No data available for Paralogs for SNORD38D Gene

Variants for SNORD38D Gene

Relevant External Links for SNORD38D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD38D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD38D Gene

Disorders for SNORD38D Gene

Relevant External Links for SNORD38D

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD38D

No disorders were found for SNORD38D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD38D Gene

Publications for SNORD38D Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORD38D Gene

Sources for SNORD38D Gene

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