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Aliases for SNORD38B Gene

Subcategory (RNA class) for SNORD38B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD38B Gene

  • Small Nucleolar RNA, C/D Box 38B 2 3
  • RNA, U38B Small Nucleolar 2 3
  • U38B Small Nucleolar RNA 3
  • U38B SnoRNA 3
  • RNU38B 3
  • U38B 3

External Ids for SNORD38B Gene

Previous HGNC Symbols for SNORD38B Gene

  • RNU38B

Previous GeneCards Identifiers for SNORD38B Gene

  • GC01P045018
  • GC01P045244
  • GC01P045246
  • GC01P043357

Summaries for SNORD38B Gene

GeneCards Summary for SNORD38B Gene

SNORD38B (Small Nucleolar RNA, C/D Box 38B) is an RNA Gene, and is affiliated with the snoRNA class. Among its related pathways are CFTR translational fidelity (class I mutations).

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD38B Gene

Genomics for SNORD38B Gene

Regulatory Elements for SNORD38B Gene

Genomic Location for SNORD38B Gene

Start:
44,778,390 bp from pter
End:
44,778,458 bp from pter
Size:
69 bases
Orientation:
Plus strand

Genomic View for SNORD38B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD38B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD38B Gene

Proteins for SNORD38B Gene

Post-translational modifications for SNORD38B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD38B Gene

Domains for SNORD38B Gene

Gene Families for SNORD38B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD38B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD38B Gene

Function for SNORD38B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD38B Gene

Localization for SNORD38B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD38B Gene

Pathways for SNORD38B Gene

genes like me logo Genes that share pathways with SNORD38B: view

Pathways by source for SNORD38B Gene

1 BioSystems pathway for SNORD38B Gene

Interacting Proteins for SNORD38B Gene

Gene Ontology (GO) - Biological Process for SNORD38B Gene

None

Transcripts for SNORD38B Gene

mRNA/cDNA for SNORD38B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD38B Gene

No ASD Table

Relevant External Links for SNORD38B Gene

GeneLoc Exon Structure for
SNORD38B
ECgene alternative splicing isoforms for
SNORD38B

Expression for SNORD38B Gene

mRNA expression in normal human tissues for SNORD38B Gene

genes like me logo Genes that share expressions with SNORD38B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD38B Gene

Orthologs for SNORD38B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD38B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snosnR61 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snosnR61 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snosnR61 36
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia snosnR61 36
  • 36 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea snosnR61 36
  • 51 (a)
OneToOne
Species with no ortholog for SNORD38B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD38B Gene

ENSEMBL:
Gene Tree for SNORD38B (if available)
TreeFam:
Gene Tree for SNORD38B (if available)

Paralogs for SNORD38B Gene

No data available for Paralogs for SNORD38B Gene

Variants for SNORD38B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD38B Gene

Variant ID Type Subtype PubMed ID
nsv461406 CNV Loss 19166990
nsv870815 CNV Loss 21882294

Relevant External Links for SNORD38B Gene

HapMap Linkage Disequilibrium report
SNORD38B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD38B Gene

Disorders for SNORD38B Gene

No disorders were found for SNORD38B Gene.

No data available for UniProtKB/Swiss-Prot for SNORD38B Gene

Publications for SNORD38B Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD38B Gene

Sources for SNORD38B Gene

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