Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD38A Gene

Subcategory (RNA class) for SNORD38A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD38A Gene

  • Small Nucleolar RNA, C/D Box 38A 2 3 5
  • RNA, U38A Small Nucleolar 2 3
  • U38A Small Nucleolar RNA 3
  • U38A SnoRNA 3
  • RNU38A 3
  • U38A 3

External Ids for SNORD38A Gene

Previous HGNC Symbols for SNORD38A Gene

  • RNU38A

Previous GeneCards Identifiers for SNORD38A Gene

  • GC01P045017
  • GC01P045243
  • GC01P043356
  • GC01P044778
  • GC01P044785
  • GC01P044791
  • GC01P044798

Summaries for SNORD38A Gene

GeneCards Summary for SNORD38A Gene

SNORD38A (Small Nucleolar RNA, C/D Box 38A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD38A Gene

Genomics for SNORD38A Gene

Regulatory Elements for SNORD38A Gene

Enhancers for SNORD38A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F044805 1.2 ENCODE 11.2 +32.6 32609 10.7 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 TBX21 MEF2D DMAP1 TOE1 RPS8 ENSG00000225721 UROD KIF2C BEST4 SNORD38A SNORD46 ZSWIM5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD38A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD38A Gene

Chromosome:
1
Start:
44,777,842 bp from pter
End:
44,777,912 bp from pter
Size:
71 bases
Orientation:
Plus strand

Genomic View for SNORD38A Gene

Genes around SNORD38A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD38A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD38A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD38A Gene

Proteins for SNORD38A Gene

Post-translational modifications for SNORD38A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD38A Gene

Domains & Families for SNORD38A Gene

Gene Families for SNORD38A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD38A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD38A Gene

Function for SNORD38A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD38A Gene

Localization for SNORD38A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD38A Gene

Pathways & Interactions for SNORD38A Gene

SuperPathways for SNORD38A Gene

No Data Available

Interacting Proteins for SNORD38A Gene

Gene Ontology (GO) - Biological Process for SNORD38A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD38A Gene

Transcripts for SNORD38A Gene

mRNA/cDNA for SNORD38A Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD38A Gene

No ASD Table

Relevant External Links for SNORD38A Gene

GeneLoc Exon Structure for
SNORD38A
ECgene alternative splicing isoforms for
SNORD38A

Expression for SNORD38A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD38A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD38A Gene:

SNORD38A
genes like me logo Genes that share expression patterns with SNORD38A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD38A Gene

Orthologs for SNORD38A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD38A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD38 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD38 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord38a 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD38 35
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD38 35
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD38 35
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD38 35
  • 73 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD38 35
  • 68 (a)
OneToOne
Species where no ortholog for SNORD38A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD38A Gene

ENSEMBL:
Gene Tree for SNORD38A (if available)
TreeFam:
Gene Tree for SNORD38A (if available)

Paralogs for SNORD38A Gene

No data available for Paralogs for SNORD38A Gene

Variants for SNORD38A Gene

Sequence variations from dbSNP and Humsavar for SNORD38A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs112706003 -- 44,776,777(+) AGTGT(C/G/T)AGTGA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112943412 -- 44,776,679(+) GATTG(C/G)CCCCC downstream-variant-500B, upstream-variant-2KB, reference, missense
rs112945716 -- 44,776,032(+) CATGC(A/G)GGCAT downstream-variant-500B, upstream-variant-2KB, splice-acceptor-variant
rs114317646 -- 44,777,360(+) GTCAC(C/T)GTGCC intron-variant, upstream-variant-2KB
rs11508 -- 44,778,007(+) TCCTG(A/T)GGAAG downstream-variant-500B, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SNORD38A Gene

Variant ID Type Subtype PubMed ID
nsv998871 CNV loss 25217958
nsv546145 CNV loss 21841781
nsv461406 CNV loss 19166990

Relevant External Links for SNORD38A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD38A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD38A Gene

Disorders for SNORD38A Gene

Relevant External Links for SNORD38A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD38A

No disorders were found for SNORD38A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD38A Gene

Publications for SNORD38A Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD38A Gene

Sources for SNORD38A Gene

Content
Loading form....