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Aliases for SNORD38A Gene

Subcategory (RNA class) for SNORD38A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD38A Gene

  • Small Nucleolar RNA, C/D Box 38A 2 3
  • RNA, U38A Small Nucleolar 2 3
  • U38A Small Nucleolar RNA 3
  • U38A SnoRNA 3
  • RNU38A 3
  • U38A 3

External Ids for SNORD38A Gene

Previous HGNC Symbols for SNORD38A Gene

  • RNU38A

Previous GeneCards Identifiers for SNORD38A Gene

  • GC01P045017
  • GC01P045243
  • GC01P043356

Summaries for SNORD38A Gene

GeneCards Summary for SNORD38A Gene

SNORD38A (Small Nucleolar RNA, C/D Box 38A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD38A Gene

Genomics for SNORD38A Gene

Regulatory Elements for SNORD38A Gene

Genomic Location for SNORD38A Gene

Start:
44,777,842 bp from pter
End:
44,777,912 bp from pter
Size:
71 bases
Orientation:
Plus strand

Genomic View for SNORD38A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD38A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD38A Gene

Proteins for SNORD38A Gene

Post-translational modifications for SNORD38A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD38A Gene

Domains for SNORD38A Gene

Gene Families for SNORD38A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD38A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD38A Gene

Function for SNORD38A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD38A Gene

Localization for SNORD38A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD38A Gene

Pathways for SNORD38A Gene

SuperPathways for SNORD38A Gene

No Data Available

Interacting Proteins for SNORD38A Gene

Gene Ontology (GO) - Biological Process for SNORD38A Gene

None

No data available for Pathways by source for SNORD38A Gene

Transcripts for SNORD38A Gene

mRNA/cDNA for SNORD38A Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD38A Gene

No ASD Table

Relevant External Links for SNORD38A Gene

GeneLoc Exon Structure for
SNORD38A
ECgene alternative splicing isoforms for
SNORD38A

Expression for SNORD38A Gene

mRNA expression in normal human tissues for SNORD38A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

genes like me logo Genes that share expressions with SNORD38A: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD38A Gene

Orthologs for SNORD38A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD38A Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord38a 16
Snord38a 36
  • 75 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD38 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD38 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD38 36
  • 73 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNORD38 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD38 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD38 36
  • 73 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD38 36
  • 68 (a)
OneToOne
Species with no ortholog for SNORD38A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD38A Gene

ENSEMBL:
Gene Tree for SNORD38A (if available)
TreeFam:
Gene Tree for SNORD38A (if available)

Paralogs for SNORD38A Gene

No data available for Paralogs for SNORD38A Gene

Variants for SNORD38A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD38A Gene

Variant ID Type Subtype PubMed ID
nsv461406 CNV Loss 19166990
nsv870815 CNV Loss 21882294

Relevant External Links for SNORD38A Gene

HapMap Linkage Disequilibrium report
SNORD38A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD38A Gene

Disorders for SNORD38A Gene

No disorders were found for SNORD38A Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD38A Gene

Publications for SNORD38A Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD38A Gene

Sources for SNORD38A Gene

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