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SNORD37 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 37

GCID:
GC19M003982
GIFtS:
19
Genes Participants
UDN Logo

Aliases for SNORD37 Gene

Subcategory (RNA class) for SNORD37 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD37 Gene

  • Small Nucleolar RNA, C/D Box 37 2 3 5
  • RNA, U37 Small Nucleolar 2 3
  • RNU37 3
  • U37 3

External Ids for SNORD37 Gene

ORGUL Members for SNORD37 Gene

Previous HGNC Symbols for SNORD37 Gene

  • RNU37

Previous GeneCards Identifiers for SNORD37 Gene

  • GC19M003935
  • GC19M003936
  • GC19M003745

Summaries for SNORD37 Gene

GeneCards Summary for SNORD37 Gene

SNORD37 (Small Nucleolar RNA, C/D Box 37) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD37 Gene

Genomics for SNORD37 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNORD37 Gene

Enhancers for SNORD37 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G004204 1.2 Ensembl ENCODE 11.4 -222.3 -222335 0.9 TBP PKNOX1 TBL1XR1 RB1 CREB3L1 ZNF76 ZNF2 THRB ZSCAN9 RAD21 DPP9-AS1 ENSG00000267030 APBA3 ANKRD24 SIRT6 CREB3L3 ENSG00000267769 EBI3 CCDC94 CACTIN-AS1
GH19G004208 0.8 ENCODE 11.5 -226.2 -226187 1.4 BCOR ELF3 CTCF PTBP1 TEAD4 ZMYM3 RAD21 ADNP ZNF143 SMC3 CCDC94 EBI3 SIRT6 ANKRD24 CREB3L3 SNORD37 TMIGD2 FSD1 GC19P004210 GC19M004225
GH19G004207 0.7 ENCODE 11.5 -224.8 -224772 0.1 BCOR CTCF ESRRA ZNF280D PTBP1 ZMYM3 TRIM22 RAD21 ADNP SMC3 ANKRD24 SIRT6 EBI3 CREB3L3 CCDC94 SNORD37 FSD1 TMIGD2 GC19P004210 GC19P004195
GH19G004209 0.6 ENCODE 11.5 -225.3 -225347 0.2 CTCF SMARCA5 PTBP1 MIER1 CEBPB MLLT1 PRDM4 EBI3 CCDC94 SIRT6 ANKRD24 CREB3L3 SNORD37 TMIGD2 FSD1 GC19P004210 GC19P004195
GH19G004214 0.6 ENCODE 11.5 -232.3 -232347 0.2 HDGF ASH2L RBBP5 ZFHX2 IKZF1 NBN RELB IKZF2 EGR2 CCDC94 SIRT6 ANKRD24 CREB3L3 SNORD37 TMIGD2 FSD1 GC19P004210 GC19M004225
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD37 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the SNORD37 gene promoter:

Genomic Location for SNORD37 Gene

Chromosome:
19
Start:
3,982,507 bp from pter
End:
3,982,572 bp from pter
Size:
66 bases
Orientation:
Minus strand

Genomic View for SNORD37 Gene

Genes around SNORD37 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD37 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD37 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD37 Gene

Proteins for SNORD37 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD37 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD37 Gene

Domains & Families for SNORD37 Gene

Gene Families for SNORD37 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD37: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD37 Gene

Function for SNORD37 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD37 Gene

Localization for SNORD37 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD37 Gene

Pathways & Interactions for SNORD37 Gene

SuperPathways for SNORD37 Gene

PathCards logo More details on SuperPathways for SNORD37
No Data Available

Interacting Proteins for SNORD37 Gene

Gene Ontology (GO) - Biological Process for SNORD37 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD37 Gene

Drugs & Compounds for SNORD37 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD37 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD37 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD37 Gene

No ASD Table

Relevant External Links for SNORD37 Gene

GeneLoc Exon Structure for
SNORD37
ECgene alternative splicing isoforms for
SNORD37

Expression for SNORD37 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD37 Gene

mRNA expression in normal human tissues for SNORD37 Gene
mRNA expression by GTEx for SNORD37 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD37 Gene:

SNORD37
genes like me logo Genes that share expression patterns with SNORD37: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD37 Gene

Orthologs for SNORD37 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD37 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD37 35
  • 94 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD37 35
  • 80 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD37 35
  • 80 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD37 35
  • 79 (a)
 OneToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD37 35
  • 79 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Snord37 35
  • 78 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves SNORD37 35
  • 70 (a)
 OneToMany
zebrafish
(Danio rerio)
 Actinopterygii SNORD37 35 35
  • 66 (a)
 ManyToMany
Species where no ortholog for SNORD37 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD37 Gene

ENSEMBL:
Gene Tree for SNORD37 (if available)
TreeFam:
Gene Tree for SNORD37 (if available)

Paralogs for SNORD37 Gene

No data available for Paralogs for SNORD37 Gene

Variants for SNORD37 Gene

Sequence variations from dbSNP and Humsavar for SNORD37 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000079314 -- 3,983,654(+) CTCCA(A/G)GGGAA intron-variant, upstream-variant-2KB
rs1000527322 -- 3,982,172(+) GAATA(A/G)CACAC intron-variant, downstream-variant-500B
rs1001266215 -- 3,983,536(+) CCCCA(A/C)CGACT intron-variant, upstream-variant-2KB
rs1001339354 -- 3,983,966(+) TCCCT(G/T)TGCCT intron-variant, upstream-variant-2KB
rs1002737546 -- 3,983,782(+) GAACA(G/T)CATCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD37 Gene

Variant ID Type Subtype PubMed ID
nsv2392 CNV insertion 18451855
nsv953949 CNV deletion 24416366

Relevant External Links for SNORD37 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD37

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD37 Gene

Disorders for SNORD37 Gene

Relevant External Links for SNORD37

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD37

No disorders were found for SNORD37 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD37 Gene

Publications for SNORD37 Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD37 Gene

Sources for SNORD37 Gene

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