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Aliases for SNORD35B Gene

Subcategory (RNA class) for SNORD35B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD35B Gene

  • Small Nucleolar RNA, C/D Box 35B 2 3
  • RNA, U35B Small Nucleolar 2 3
  • RNA, Small Nucleolar 3
  • SnoRNA 3
  • RNU35B 3
  • U35B 3

External Ids for SNORD35B Gene

ORGUL Members for SNORD35B Gene

Previous Symbols for SNORD35B Gene

  • RNU35B

Summaries for SNORD35B Gene

GeneCards Summary for SNORD35B Gene

SNORD35B (Small Nucleolar RNA, C/D Box 35B) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD35B Gene

Genomics for SNORD35B Gene

Genomic Location for SNORD35B Gene

Start:
49,497,719 bp from pter
End:
49,497,806 bp from pter
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD35B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD35B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD35B Gene

Regulatory Elements for SNORD35B Gene

Proteins for SNORD35B Gene

Post-translational modifications for SNORD35B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD35B Gene

Domains for SNORD35B Gene

Gene Families for SNORD35B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD35B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD35B Gene

Function for SNORD35B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD35B Gene

Localization for SNORD35B Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD35B Gene

Pathways for SNORD35B Gene

SuperPathways for SNORD35B Gene

No Data Available

Interacting Proteins for SNORD35B Gene

Gene Ontology (GO) - Biological Process for SNORD35B Gene

None

No data available for Pathways by source for SNORD35B Gene

Transcripts for SNORD35B Gene

mRNA/cDNA for SNORD35B Gene

(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD35B Gene

No ASD Table

Relevant External Links for SNORD35B Gene

GeneLoc Exon Structure for
SNORD35B
ECgene alternative splicing isoforms for
SNORD35B

Expression for SNORD35B Gene

mRNA expression in normal human tissues for SNORD35B Gene

genes like me logo Genes that share expressions with SNORD35B: view

Orthologs for SNORD35B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD35B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD35 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD35 37
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD35 37
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord35b 16
Snord35b 37
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD35 37
  • 66 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD35 37
  • 67 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD35 37
  • 63 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD35 37
  • 62 (a)
OneToOne
Species with no ortholog for SNORD35B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD35B Gene

ENSEMBL:
Gene Tree for SNORD35B (if available)
TreeFam:
Gene Tree for SNORD35B (if available)

Paralogs for SNORD35B Gene

No data available for Paralogs for SNORD35B Gene

Variants for SNORD35B Gene

Sequence variations from dbSNP and Humsavar for SNORD35B Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs11549545 -- 49,497,325(+) AAGGA(A/G)GCTAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD35B Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV Gain+Loss 18304495
nsv912261 CNV Loss 21882294
nsv912262 CNV Loss 21882294
nsv912264 CNV Loss 21882294
nsv833862 CNV Loss 17160897
nsv912265 CNV Loss 21882294
nsv833863 CNV Loss 17160897

Relevant External Links for SNORD35B Gene

HapMap Linkage Disequilibrium report
SNORD35B

Disorders for SNORD35B Gene

No disorders were found for SNORD35B Gene.

No data available for UniProtKB/Swiss-Prot for SNORD35B Gene

Publications for SNORD35B Gene

  1. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S. … Kenmochi N. (Gene 1999) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y. … Kamatani N. (Nat. Genet. 2010) 3
  4. Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. (PMID: 21909109) Kim Y.J. … Cho Y.S. (Nat. Genet. 2011) 3
  5. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N. … Morris A.P. (Am. J. Hum. Genet. 2012) 3

Products for SNORD35B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD35B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD35B
    • Block miRNA regulation of SNORD35B using miScript Target Protectors

    Sources for SNORD35B Gene

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