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Aliases for SNORD35B Gene

Subcategory (RNA class) for SNORD35B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD35B Gene

  • Small Nucleolar RNA, C/D Box 35B 2 3 5
  • RNA, U35B Small Nucleolar 2 3
  • RNA, Small Nucleolar 3
  • SnoRNA 3
  • RNU35B 3
  • U35B 3

External Ids for SNORD35B Gene

ORGUL Members for SNORD35B Gene

Previous HGNC Symbols for SNORD35B Gene

  • RNU35B

Previous GeneCards Identifiers for SNORD35B Gene

  • GC19P054727
  • GC19P054734
  • GC19P054741
  • GC19P054748
  • GC19P054754
  • GC19P054765
  • GC19P054773
  • GC19P054785
  • GC19P050001
  • GC19P046378
  • GC19P050006
  • GC19P050016
  • GC19P050031
  • GC19P050048
  • GC19P049498
  • GC19P049503
  • GC19P049511
  • GC19P049518

Summaries for SNORD35B Gene

GeneCards Summary for SNORD35B Gene

SNORD35B (Small Nucleolar RNA, C/D Box 35B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD35B Gene

Genomics for SNORD35B Gene

Regulatory Elements for SNORD35B Gene

Enhancers for SNORD35B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F048612 0.2 ENCODE 35.7 -881.0 -880957 7.8 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 KDELR1 GRWD1 PRR12 SNORD35A ENSG00000269321 ALDH16A1 SNORD35B TEAD2 RPS11 RPL18
GH19F049857 0.6 FANTOM5 ENCODE 29.4 +363.0 363005 6.7 HDGF PKNOX1 ZFP64 ZNF2 ZNF302 PAF1 SP3 REST TBX21 SMARCB1 PRR12 PTOV1-AS2 NUP62 SNORD35A ENSG00000268047 PIH1D1 POLD1 SNORD35B PNKP ALDH16A1
GH19F048780 0.8 Ensembl ENCODE 29.4 -716.0 -716032 3.0 PKNOX1 ARNT ZFP64 ARID4B CBX5 ZNF143 FOS KLF13 SP5 JUNB PRR12 GRWD1 CYTH2 SNORD35A PIH1D1 KDELR1 ENSG00000268093 SNORD35B ALDH16A1 RPS11
GH19F049450 0.2 ENCODE 23.8 -44.9 -44908 4.7 HDGF PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 ALDH16A1 POLD1 SNORD35A SNORD35B TEAD2 NUP62 PIH1D1 FLT3LG PRR12 RPL18
GH19F048871 0.8 ENCODE 23.5 -622.0 -621968 8.2 CREB3L1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 MEF2D SSRP1 SNORD35A KDELR1 PRR12 GRWD1 ALDH16A1 SNORD35B PIH1D1 FLT3LG RPS11 RPL18
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD35B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD35B Gene

Chromosome:
19
Start:
49,497,719 bp from pter
End:
49,497,806 bp from pter
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD35B Gene

Genes around SNORD35B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD35B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD35B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD35B Gene

Proteins for SNORD35B Gene

Post-translational modifications for SNORD35B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD35B Gene

Domains & Families for SNORD35B Gene

Gene Families for SNORD35B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD35B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD35B Gene

Function for SNORD35B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD35B Gene

Localization for SNORD35B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD35B Gene

Pathways & Interactions for SNORD35B Gene

SuperPathways for SNORD35B Gene

No Data Available

Interacting Proteins for SNORD35B Gene

Gene Ontology (GO) - Biological Process for SNORD35B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD35B Gene

Transcripts for SNORD35B Gene

mRNA/cDNA for SNORD35B Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD35B Gene

No ASD Table

Relevant External Links for SNORD35B Gene

GeneLoc Exon Structure for
SNORD35B
ECgene alternative splicing isoforms for
SNORD35B

Expression for SNORD35B Gene

mRNA expression in normal human tissues for SNORD35B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD35B Gene:

SNORD35B
genes like me logo Genes that share expression patterns with SNORD35B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD35B Gene

Orthologs for SNORD35B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD35B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD35 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD35 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord35b 35
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD35 35
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD35 35
  • 67 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD35 35
  • 66 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD35 35
  • 63 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD35 35
  • 62 (a)
OneToOne
Species where no ortholog for SNORD35B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD35B Gene

ENSEMBL:
Gene Tree for SNORD35B (if available)
TreeFam:
Gene Tree for SNORD35B (if available)

Paralogs for SNORD35B Gene

No data available for Paralogs for SNORD35B Gene

Variants for SNORD35B Gene

Sequence variations from dbSNP and Humsavar for SNORD35B Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10402610 -- 49,495,923(+) gccac(C/T)gcgct upstream-variant-2KB
rs10403394 -- 49,496,088(+) GAACA(A/G)AGCCA upstream-variant-2KB
rs1065733 -- 49,497,987(+) CGCAA(A/C/G)TACAA downstream-variant-500B, reference, synonymous-codon, missense
rs1065734 -- 49,497,990(+) AAGTA(C/T)AACCG downstream-variant-500B, reference, synonymous-codon
rs1065735 -- 49,497,994(+) ACAAC(A/C/G)GCTTC downstream-variant-500B, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SNORD35B Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Relevant External Links for SNORD35B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD35B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD35B Gene

Disorders for SNORD35B Gene

Relevant External Links for SNORD35B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD35B

No disorders were found for SNORD35B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD35B Gene

Publications for SNORD35B Gene

  1. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S. … Kenmochi N. (Gene 1999) 2 3 64
  2. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N. … Morris A.P. (Am. J. Hum. Genet. 2012) 3 64
  3. Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. (PMID: 21909109) Kim Y.J. … Cho Y.S. (Nat. Genet. 2011) 3 64
  4. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y. … Kamatani N. (Nat. Genet. 2010) 3 64
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD35B Gene

Sources for SNORD35B Gene

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