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Aliases for SNORD33 Gene

Subcategory (RNA class) for SNORD33 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD33 Gene

  • Small Nucleolar RNA, C/D Box 33 2 3 5
  • RNA, U33 Small Nucleolar 2 3
  • U33 Small Nucleolar RNA 3
  • U33 SnoRNA 3
  • RNU33 3
  • U33 3

External Ids for SNORD33 Gene

ORGUL Members for SNORD33 Gene

Previous HGNC Symbols for SNORD33 Gene

  • RNU33

Previous GeneCards Identifiers for SNORD33 Gene

  • GC19P054724
  • GC19P054731
  • GC19P054738
  • GC19P054745
  • GC19P054751
  • GC19P054757
  • GC19P054769
  • GC19P054782
  • GC19P049994
  • GC19P050010
  • GC19P050022
  • GC19P050043
  • GC19P049491
  • GC19P049495
  • GC19P049499
  • GC19P049502

Summaries for SNORD33 Gene

GeneCards Summary for SNORD33 Gene

SNORD33 (Small Nucleolar RNA, C/D Box 33) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD33 Gene

Genomics for SNORD33 Gene

Regulatory Elements for SNORD33 Gene

Enhancers for SNORD33 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G049552 1.4 Ensembl ENCODE dbSUPER 11.9 +64.7 64735 5.7 PKNOX1 CBX3 NFRKB ARID4B ZBTB40 GATA2 CBX5 FOS MIXL1 EGR2 NOSIP PRR12 FCGRT RCN3 PRRG2 MIR150 SNORD35B RPS11 SNORD33 SNORD34
GH19G049558 1.2 Ensembl ENCODE dbSUPER 11.9 +70.1 70110 4.3 BCOR TFAP4 ZMYM3 ZNF664 ZFHX2 FOXK2 EGR1 ADNP ZSCAN29 NFE2 PRR12 NOSIP RCN3 FCGRT MIR150 RPS11 SNORD35B SNORD34 SNORD35A RPL13A
GH19G049457 1.2 Ensembl ENCODE dbSUPER 11.7 -32.3 -32250 1.6 HDGF HCFC1 L3MBTL2 BHLHE40 NR2F1 DPF2 ZBTB40 ZNF592 GABPA POLR2A RPL13A SNORD32A SNORD33 SNORD35A SNORD34 SLC6A16 CD37 FLT3LG ENSG00000269469 PIH1D1
GH19G049511 1 ENCODE 12.9 +23.7 23742 5.7 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 ZNF48 TCF12 ZNF121 GLIS2 PRR12 RCN3 FCGRT SNORD32A SNORD33 SNORD34 SNORD35A RPL13A PRRG2 NOSIP
GH19G049455 0.6 ENCODE 11.7 -34.3 -34261 1.9 ZNF121 ZNF316 ZNF341 MAFG NFE2 EMSY NFE2L2 ALDH16A1 RPL13A SNORD32A SNORD35A SNORD34 SNORD33 SLC6A16 CD37 PIH1D1 ENSG00000269469
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD33 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD33 Gene

Chromosome:
19
Start:
49,490,615 bp from pter
End:
49,490,699 bp from pter
Size:
85 bases
Orientation:
Plus strand

Genomic View for SNORD33 Gene

Genes around SNORD33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD33 Gene

Proteins for SNORD33 Gene

Post-translational modifications for SNORD33 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD33 Gene

Domains & Families for SNORD33 Gene

Gene Families for SNORD33 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD33: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD33 Gene

Function for SNORD33 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD33 Gene

Localization for SNORD33 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD33 Gene

Pathways & Interactions for SNORD33 Gene

SuperPathways for SNORD33 Gene

No Data Available

Interacting Proteins for SNORD33 Gene

Gene Ontology (GO) - Biological Process for SNORD33 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD33 Gene

Drugs & Compounds for SNORD33 Gene

No Compound Related Data Available

Transcripts for SNORD33 Gene

mRNA/cDNA for SNORD33 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD33 Gene

No ASD Table

Relevant External Links for SNORD33 Gene

GeneLoc Exon Structure for
SNORD33
ECgene alternative splicing isoforms for
SNORD33

Expression for SNORD33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD33 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD33 Gene:

SNORD33
genes like me logo Genes that share expression patterns with SNORD33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD33 Gene

Orthologs for SNORD33 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD33 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD33 35
  • 91 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD33 35 35 35
  • 84 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snord33 35
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD33 35
  • 72 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD33 35
  • 69 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD33 35
  • 52 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD33 35
  • 64 (a)
OneToMany
Species where no ortholog for SNORD33 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD33 Gene

ENSEMBL:
Gene Tree for SNORD33 (if available)
TreeFam:
Gene Tree for SNORD33 (if available)

Paralogs for SNORD33 Gene

No data available for Paralogs for SNORD33 Gene

Variants for SNORD33 Gene

Sequence variations from dbSNP and Humsavar for SNORD33 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1001127408 -- 49,489,093(+) CATGG(A/G)CTTTT intron-variant, upstream-variant-2KB
rs1001661897 -- 49,489,293(+) AGTAC(-/AAG)AAGAG intron-variant, upstream-variant-2KB
rs1001944060 -- 49,489,496(+) CAGTT(C/T)ATTAG intron-variant, upstream-variant-2KB
rs1006140111 -- 49,489,791(+) TTGCT(C/T)GTGAG intron-variant, upstream-variant-2KB
rs1006729505 -- 49,488,875(+) TAATT(C/T)TTGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD33 Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv960858 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Relevant External Links for SNORD33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD33 Gene

Disorders for SNORD33 Gene

Relevant External Links for SNORD33

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD33

No disorders were found for SNORD33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD33 Gene

Publications for SNORD33 Gene

  1. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S. … Kenmochi N. (Gene 1999) 2 3 64
  2. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD33 Gene

Sources for SNORD33 Gene

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