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Aliases for SNORD28 Gene

Subcategory (RNA class) for SNORD28 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD28 Gene

  • Small Nucleolar RNA, C/D Box 28 2 3 5
  • RNA, U28 Small Nucleolar 2 3
  • SNORD28A 3
  • RNU28 3
  • U28 3

External Ids for SNORD28 Gene

ORGUL Members for SNORD28 Gene

Previous HGNC Symbols for SNORD28 Gene

  • RNU28

Previous GeneCards Identifiers for SNORD28 Gene

  • GC11M062397
  • GC11M062405
  • GC11M062415
  • GC11M062424
  • GC11M062627
  • GC11M062632
  • GC11M058954
  • GC11M062639
  • GC11M062647
  • GC11M062652
  • GC11M062657
  • GC11M062669
  • GC11M062858
  • GC11M062867
  • GC11M062875
  • GC11M062885
  • GC11M062893
  • GC11M062901

Summaries for SNORD28 Gene

GeneCards Summary for SNORD28 Gene

SNORD28 (Small Nucleolar RNA, C/D Box 28) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD28 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD28 Gene

Genomics for SNORD28 Gene

Regulatory Elements for SNORD28 Gene

Enhancers for SNORD28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H062878 1.4 ENCODE dbSUPER 11.8 -27.1 -27138 5 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 SNHG1 TTC9C SNORD28 SLC3A2 ENSG00000257002 SNORD22 TAF6L METTL12 AHNAK BSCL2
GH11H062887 1.5 Ensembl ENCODE dbSUPER 10.8 -35.1 -35065 4 PKNOX1 MLX ARID4B DMAP1 TCF12 ZNF121 ATF7 DEK PAF1 NCOA1 BSCL2 TAF6L SLC3A2 SNHG1 SNORD28 TUT1 SNORD22 SLC22A6 AHNAK TTC9C
GH11H062830 1.3 ENCODE dbSUPER 11.3 +22.2 22244 4 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS WDR74 SNHG1 UBXN1 LOC105369332 NXF1 SNORD28 SLC3A2 METTL12 TAF6L LRRN4CL
GH11H062712 1 ENCODE dbSUPER 10.3 +140.8 140770 3 FOXA2 MAX RAD21 YY1 FOSL1 ZNF316 ZNF600 NFE2 FOXA1 ZNF592 TTC9C UBXN1 LBHD1 LRRN4CL POLR2G GANAB B3GAT3 UQCC3 EML3 ROM1
GH11H062694 0.7 ENCODE 10.3 +159.8 159831 1 CTCF RB1 BACH1 RAD21 CC2D1A POLR2A EGR1 SMC3 ZNF143 NFE2 BSCL2 TTC9C LBHD1 ENSG00000255432 METTL12 SNORA57 INTS5 GANAB UQCC3 EML3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD28 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD28 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000040484 -1105 2801 HNRNPUL1 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1

Genomic Location for SNORD28 Gene

Chromosome:
11
Start:
62,854,621 bp from pter
End:
62,854,695 bp from pter
Size:
75 bases
Orientation:
Minus strand

Genomic View for SNORD28 Gene

Genes around SNORD28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD28 Gene

Proteins for SNORD28 Gene

Post-translational modifications for SNORD28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD28 Gene

Domains & Families for SNORD28 Gene

Gene Families for SNORD28 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD28: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD28 Gene

Function for SNORD28 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD28
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD28 Gene

Localization for SNORD28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD28 Gene

Pathways & Interactions for SNORD28 Gene

SuperPathways for SNORD28 Gene

No Data Available

Interacting Proteins for SNORD28 Gene

Gene Ontology (GO) - Biological Process for SNORD28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD28 Gene

Drugs & Compounds for SNORD28 Gene

No Compound Related Data Available

Transcripts for SNORD28 Gene

mRNA/cDNA for SNORD28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD28
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD28 Gene

No ASD Table

Relevant External Links for SNORD28 Gene

GeneLoc Exon Structure for
SNORD28
ECgene alternative splicing isoforms for
SNORD28

Expression for SNORD28 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD28 Gene:

SNORD28
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD28 Gene

Orthologs for SNORD28 Gene

Evolution for SNORD28 Gene

ENSEMBL:
Gene Tree for SNORD28 (if available)
TreeFam:
Gene Tree for SNORD28 (if available)

No data available for Orthologs for SNORD28 Gene

Paralogs for SNORD28 Gene

No data available for Paralogs for SNORD28 Gene

Variants for SNORD28 Gene

Sequence variations from dbSNP and Humsavar for SNORD28 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000055291 -- 62,855,272(+) TGACA(G/T)TTGTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000661059 -- 62,855,896(+) ATCTC(C/T)CCGGG upstream-variant-2KB
rs1000988950 -- 62,855,843(+) AGCTA(C/T)AAAGA intron-variant, upstream-variant-2KB
rs1001419761 -- 62,855,320(+) TCCAC(C/T)AATCC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1002424048 -- 62,855,938(+) ACGGG(A/C)TTTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD28 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Relevant External Links for SNORD28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD28 Gene

Disorders for SNORD28 Gene

Relevant External Links for SNORD28

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD28

No disorders were found for SNORD28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD28 Gene

Publications for SNORD28 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60
  3. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 60

Products for SNORD28 Gene

Sources for SNORD28 Gene

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