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Aliases for SNORD27 Gene

Subcategory (RNA class) for SNORD27 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD27 Gene

  • Small Nucleolar RNA, C/D Box 27 2 3 5
  • RNA, U27 Small Nucleolar 2 3
  • RNU27 3
  • U27 3

External Ids for SNORD27 Gene

ORGUL Members for SNORD27 Gene

Previous HGNC Symbols for SNORD27 Gene

  • RNU27

Previous GeneCards Identifiers for SNORD27 Gene

  • GC11M062398
  • GC11M062406
  • GC11M062416
  • GC11M062425
  • GC11M062629
  • GC11M062634
  • GC11M058955
  • GC11M062640
  • GC11M062648
  • GC11M062653
  • GC11M062659
  • GC11M062670
  • GC11M062859
  • GC11M062868
  • GC11M062876
  • GC11M062886
  • GC11M062894
  • GC11M062902
  • GC11M062910

Summaries for SNORD27 Gene

GeneCards Summary for SNORD27 Gene

SNORD27 (Small Nucleolar RNA, C/D Box 27) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD27 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD27 Gene

Genomics for SNORD27 Gene

GeneHancer (GH) Regulatory Elements for SNORD27 Gene

Promoters and enhancers for SNORD27 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I062852 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.8 -754 5.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNHG1 SLC3A2 ENSG00000278527 GC11M062911 GC11M062919 GC11M062920 GC11M062923 GC11M062925 GC11M062930 SNORD25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD27 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD27 gene promoter:

Genomic Locations for SNORD27 Gene

Genomic Locations for SNORD27 Gene
chr11:62,855,012-62,855,083
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)

Genomic View for SNORD27 Gene

Genes around SNORD27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD27 Gene

Proteins for SNORD27 Gene

Post-translational modifications for SNORD27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD27 Gene

Domains & Families for SNORD27 Gene

Gene Families for SNORD27 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD27: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD27 Gene

Function for SNORD27 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD27 Gene

Localization for SNORD27 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD27 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD27 Gene

Pathways & Interactions for SNORD27 Gene

SuperPathways for SNORD27 Gene

No Data Available

Interacting Proteins for SNORD27 Gene

Gene Ontology (GO) - Biological Process for SNORD27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD27 Gene

Drugs & Compounds for SNORD27 Gene

No Compound Related Data Available

Transcripts for SNORD27 Gene

mRNA/cDNA for SNORD27 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD27 Gene

No ASD Table

Relevant External Links for SNORD27 Gene

GeneLoc Exon Structure for
SNORD27
ECgene alternative splicing isoforms for
SNORD27

Expression for SNORD27 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD27 Gene:

SNORD27
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD27 Gene

Orthologs for SNORD27 Gene

Evolution for SNORD27 Gene

ENSEMBL:
Gene Tree for SNORD27 (if available)
TreeFam:
Gene Tree for SNORD27 (if available)

No data available for Orthologs for SNORD27 Gene

Paralogs for SNORD27 Gene

No data available for Paralogs for SNORD27 Gene

Variants for SNORD27 Gene

Sequence variations from dbSNP and Humsavar for SNORD27 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G upstream_transcript_variant
rs1000661059 -- 62,855,896(-) C/T upstream_transcript_variant
rs1000988950 -- 62,855,843(-) T/C upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C upstream_transcript_variant
rs1002424048 -- 62,855,938(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD27 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD27 Gene

Disorders for SNORD27 Gene

Additional Disease Information for SNORD27

No disorders were found for SNORD27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD27 Gene

Publications for SNORD27 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 58
  2. Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. (PMID: 26957605) Falaleeva M … Stamm S (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 58
  3. Genomic analysis of high-risk smoldering multiple myeloma. (PMID: 22331267) López-Corral L … Gutiérrez NC (Haematologica 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  5. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 58

Products for SNORD27 Gene

Sources for SNORD27 Gene

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