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SNORD24 Gene

RNA gene GIFtS: 19
GCID: GC09P136283

Small Nucleolar RNA, C/D Box 24

(Previous names: RNA, U24 small nucleolar)
(Previous symbol: RNU24)

Search for SNORD24
at

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Subcategory (RNA class): snoRNA

Quality score for this RNA gene is 11

Aliases
Small Nucleolar RNA, C/D Box 24¹ ²
RNU24¹ ²
RNA, U24 Small Nucleolar¹
U24²

External Ids:	HGNC: 10146¹	Entrez Gene: 26820²	Ensembl: ENSG00000206611⁷

ORGUL members:	fRNAdb¹⁰:FR017664 FR393255 FR393255 FR017664
	H-InvDB¹²:HIT000383125 HIT000383125
	NCBI¹³:AL158826 AC002107 Z48765 Z48764 X52138	see all 7
	NONCODE¹⁴:u5245
	Rfam:RF00069
	RNAdb¹⁵:SNO1402

Export aliases for SNORD24 gene to outside databases

Previous GC identifers: GC09U900790 GC09P135219 GC09P135227 GC09P135232 GC09P135239 GC09P136217 GC09P136247 GC09P136261

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SNORD24 Gene:

SNORD24 (small nucleolar RNA, C/D box 24) is an RNA gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORD24 - the ORGUL cluster for this gene includes several descriptions:
Small nucleolar RNA SNORD24 - U24 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box motifs [1]. C/D box snoRNAs have been shown to act as methylation guides for a number of RNA targets [2,3]. U24 is encoded within an intron of the gene for ribosomal protein L7a in mammals, chicken and Fugu [4]. The U76 snoRNA is found in an intron of the uRNA host gene (UHG) growth arrest specific 5 (GAS5) transcript gene [5]. snoRNAs Z20 and U76 snoRNAs show clear similarity to U24.
C_D_box_snoRNA - Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for SNORD24

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:

Regulatory transcription factor binding sites in the SNORD24 gene promoter:
ER-alpha HOXA3 HTF Pax-2 Pax-2a FOXL1 Pax-2b Chx10 Sox9 PPAR-gamma2
Other transcription factors

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Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SNORD24

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q34 Ensembl cytogenetic band: 9q34.2 HGNC cytogenetic band: 9q34.2

SNORD24 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SNORD24 gene location

GeneLoc information about chromosome 9 GeneLoc Exon Structure

GeneLoc location for GC09P136283: view genomic region (about GC identifiers)

Start:	136,216,251 bp from pter	End:	136,216,325 bp from pter
Size:	75 bases	Orientation:	plus strand

1 alternative location:

Chr9+,NW_003315925 175,490-175,564

ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for SNORD24

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
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UniProtKB: --

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:

SNORD: ncRNAs / Small nucleolar RNAs : C/D box containing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for SNORD24 About

See pathways by source

SuperPath

Contained pathways About

CFTR translational fidelity class I mutations

Cytoplasmic Ribosomal Proteins

0.60

1 BioSystems Pathway for SNORD24

Cytoplasmic Ribosomal Proteins

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Interactions:

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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2 fRNAdb Secondary structures:

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000383884(snoRNA)

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GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for SNORD24:H-invDB

SNORD24 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: --

About this image

SNORD24 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database


NULL (Uncategorized)
Mesenchymal Progenitor Cells - Passage 2

SNORD24 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for SNORD24 gene from Selected species (see all 9) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	SNORD24⁶	Small nucleolar RNA SNORD24	84(a)	1 ↔ 1	17(6866555-6866629) ENSGALG00000017832
zebrafish (Danio rerio)	Actinopterygii	SNORD24⁶	Small nucleolar RNA SNORD24	81(a)	1 ↔ 1	5(34904485-34904556)

Species with no ortholog for SNORD24

ENSEMBL Gene Tree for SNORD24 (if available)
TreeFam Gene Tree for SNORD24 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 9 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs188694189^1,2		--	136229296(+)	`TCTACC/TAAAAA`	1	--	us2k¹		0	--	--	--	--
rs28367141^1,2	C	--	136229315(+)	`TTAGCC/TGGGCG`	1	--	us2k¹		0	--	--	--	--
rs67500972^1,2	--	--	136229324(+)	`CGTGA-/TGGCA GGCGCCTGTAAT`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for SNORD24 (136216251 - 136216325 bp)

Structural Variations
Database of Genomic Variants (DGV) 6 variations for SNORD24: About this table

Variant ID	Type	Subtype	PubMed ID
esv2739138	CNV	Deletion	23290073
nsv894076	CNV	Loss	21882294
dgv8325n71	CNV	Loss	21882294
nsv894079	CNV	Loss	21882294
nsv894080	CNV	Loss	21882294
nsv894057	CNV	Gain	21882294

Site Specific Mutation Identification with PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM information: 185640 156240 606613

SNORD24 for disorders About GeneDecksing

Export disorders for SNORD24 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for SNORD24 gene, integrated from 10 sources (see all 15):
(articles sorted by number of sources associating them with SNORD24)

Utopia: connect your pdf to the dynamic
world of online information

Human L7a ribosomal protein: sequence, structural organization, and expression of a functional gene. (PubMed id 8482538)^{1, 3} De Falco S.... Pietropaolo C. (Gene 1993)
Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells. (PubMed id 22268729)¹ Liu B....Wang L.S. (J. Proteome Res. 2012)
Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PubMed id 19446021)¹ Dieci G....Montanini B. (Genomics 2009)
Evolution of U24 and U36 snoRNAs encoded within introns of vertebrate rpL7a gene homologs: unique features of mammalian U36 variants. (PubMed id 9703018)¹ Gilley J. and Fried M. (DNA Cell Biol. 1998)
Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PubMed id 8674114)¹ Kiss-LA!szlA^ Z....Kiss T. (Cell 1996)
U24, a novel intron-encoded small nucleolar RNA with two 12 nt long, phylogenetically conserved complementarities to 28S rRNA. (PubMed id 7651828)¹ Qu L.H....Bachellerie J.P. (Nucleic Acids Res. 1995)
(PubMed id 8764399)¹⁰
(PubMed id 11606788)¹⁰
(PubMed id 8797828)¹⁰
(PubMed id 10736225)¹⁰

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 26820	HGNC: 10146	Ensembl:ENSG00000206611	euGenes: HUgn26820	ECgene: SNORD24
H-InvDB: SNORD24

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for SNORD24	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SNORD24 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for SNORD24 gene:
Search GeneIP for patents involving SNORD24

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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SNORD24 Gene

Small Nucleolar RNA, C/D Box 24

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SNORD24 Gene

Small Nucleolar RNA, C/D Box 24

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for SNORD24 gene

Expression
for SNORD24 gene

Orthologs
for SNORD24 gene

Paralogs
for SNORD24 gene

Genomic Variants
for SNORD24 gene

Disorders / Diseases
for SNORD24 gene

Publications
for SNORD24 gene

Intellectual Property
for SNORD24 gene

Products
for SNORD24 gene