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SNORD24 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 24

GCID:
GC09P133349
GIFtS:
15
Genes Participants
UDN Logo

Aliases for SNORD24 Gene

Subcategory (RNA class) for SNORD24 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD24 Gene

  • Small Nucleolar RNA, C/D Box 24 2 3 5
  • RNA, U24 Small Nucleolar 2 3
  • U24 Small Nucleolar RNA 3
  • U24 SnoRNA 3
  • RNU24 3
  • U24 3

External Ids for SNORD24 Gene

Previous HGNC Symbols for SNORD24 Gene

  • RNU24

Previous GeneCards Identifiers for SNORD24 Gene

  • GC09U900790
  • GC09P135219
  • GC09P135227
  • GC09P135232
  • GC09P135239
  • GC09P136217
  • GC09P136247
  • GC09P136261
  • GC09P136283

Summaries for SNORD24 Gene

GeneCards Summary for SNORD24 Gene

SNORD24 (Small Nucleolar RNA, C/D Box 24) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORD24 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD24 Gene

Genomics for SNORD24 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD24 Gene

Promoters and enhancers for SNORD24 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09I133346 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.6 -579 4.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 MED22 RPL7A GC09P133386 GC09P133408 GC09P133432 GC09P133433 PIR63017 SNORD24 SNORD36A SNORD36B
GH09I133416 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 11.7 +68.6 68581 3.5 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 REXO4 SURF1 SURF6 MED22 RPL7A ENSG00000273473 GTF3C5 DDX31 BRD3OS ADAMTS13
GH09I133459 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.3 +111.0 111037 2.8 HDGF CLOCK FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 CACFD1 SURF1 SURF2 SNORD36C SNORD36A MED22 RPL7A SNORD24 SNORD36B ADAMTS13
GH09I133420 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 11.7 +71.8 71838 2.3 HDGF PKNOX1 FOXA2 SMAD1 ARID4B BATF RAD21 ZNF207 ATF7 BCLAF1 ADAMTS13 SURF1 CACFD1 SURF2 MED22 RPL7A SNORD24 SNORD36C SNORD36B SNORD36A
GH09I133367 Enhancer 1.2 Ensembl ENCODE dbSUPER 13 +21.0 20979 6 FOXA2 INSM2 YY1 SCRT2 RUNX3 EGR2 SMAD5 RXRA CEBPB REST PIR38866 PIR60170 SURF6 SURF1 ADAMTS13 RPL7A SNORD24 SNORD36B MED22 ENSG00000201451
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD24 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD24 gene promoter:

Genomic Locations for SNORD24 Gene

Genomic Locations for SNORD24 Gene
chr9:133,349,396-133,349,470
(GRCh38/hg38)
Size:
75 bases
Orientation:
Plus strand
chr9:136,216,251-136,216,325
(GRCh37/hg19)

Genomic View for SNORD24 Gene

Genes around SNORD24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD24 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD24 Gene

Proteins for SNORD24 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD24 Gene

Domains & Families for SNORD24 Gene

Gene Families for SNORD24 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD24: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD24 Gene

Function for SNORD24 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD24 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD24 Gene

Localization for SNORD24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD24 Gene

Pathways & Interactions for SNORD24 Gene

SuperPathways for SNORD24 Gene

PathCards logo More details on SuperPathways for SNORD24
No Data Available

Interacting Proteins for SNORD24 Gene

Gene Ontology (GO) - Biological Process for SNORD24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD24 Gene

Drugs & Compounds for SNORD24 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD24 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD24 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD24 Gene

No ASD Table

Relevant External Links for SNORD24 Gene

GeneLoc Exon Structure for
SNORD24
ECgene alternative splicing isoforms for
SNORD24

Expression for SNORD24 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD24 Gene

mRNA expression in normal human tissues for SNORD24 Gene
mRNA expression by GTEx for SNORD24 GenemRNA expression by BioGPS for SNORD24 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD24 Gene:

SNORD24
genes like me logo Genes that share expression patterns with SNORD24: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD24 Gene

Orthologs for SNORD24 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD24 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD24 34
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD24 34 34
  • 88 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia SNORD24 34
  • 87 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm23969 34
  • 86 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD24 34
  • 83 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD24 34 34
  • 78 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves SNORD24 34
  • 84 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii SNORD24 34
  • 81 (a)
 OneToOne
sea squirt
(Ciona savignyi)
 Ascidiacea SNORD24 34
  • 73 (a)
 OneToOne
Species where no ortholog for SNORD24 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD24 Gene

ENSEMBL:
Gene Tree for SNORD24 (if available)
TreeFam:
Gene Tree for SNORD24 (if available)

Paralogs for SNORD24 Gene

No data available for Paralogs for SNORD24 Gene

Variants for SNORD24 Gene

Sequence variations from dbSNP and Humsavar for SNORD24 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000438055 -- 133,347,855(+) A/C/T upstream_transcript_variant
rs1000861174 -- 133,347,994(+) C/T upstream_transcript_variant
rs1001079473 -- 133,347,738(+) C/A upstream_transcript_variant
rs1002249886 -- 133,348,034(+) CCC/CC upstream_transcript_variant
rs1002764919 -- 133,349,121(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD24 Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV deletion 23290073
nsv1125319 OTHER inversion 24896259
nsv972461 CNV duplication 23825009

Additional Variant Information for SNORD24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD24 Gene

Disorders for SNORD24 Gene

Additional Disease Information for SNORD24

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD24 Gene

Publications for SNORD24 Gene

  1. Human L7a ribosomal protein: sequence, structural organization, and expression of a functional gene. (PMID: 8482538) De Falco S … Pietropaolo C (Gene 1993) 2 3 58
  2. Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells. (PMID: 22268729) Liu B … Wang LS (Journal of proteome research 2012) 3 58
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  5. Evolution of U24 and U36 snoRNAs encoded within introns of vertebrate rpL7a gene homologs: unique features of mammalian U36 variants. (PMID: 9703018) Gilley J … Fried M (DNA and cell biology 1998) 3 58

Products for SNORD24 Gene

Sources for SNORD24 Gene

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