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Aliases for SNORD23 Gene

Subcategory (RNA class) for SNORD23 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD23 Gene

  • Small Nucleolar RNA, C/D Box 23 2 3 5
  • HBII-115 3

External Ids for SNORD23 Gene

ORGUL Members for SNORD23 Gene

Previous GeneCards Identifiers for SNORD23 Gene

  • GC19U900582
  • GC19P052941
  • GC19P048259
  • GC19P044685

Summaries for SNORD23 Gene

GeneCards Summary for SNORD23 Gene

SNORD23 (Small Nucleolar RNA, C/D Box 23) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD23 Gene

Genomics for SNORD23 Gene

Regulatory Elements for SNORD23 Gene

Enhancers for SNORD23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F047657 1 Ensembl ENCODE 22 -92.6 -92590 10.6 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 KDELR1 CCDC9 GRWD1 SNORD23 GLTSCR1 EHD2 GLTSCR2 GLTSCR2-AS1 ZC3H4 SLC1A5
GH19F047225 0.4 ENCODE 22 -526.5 -526472 8.2 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 ZC3H4 GLTSCR1 CCDC9 ENSG00000268810 GLTSCR2-AS1 ENSG00000269321 SLC1A5 PRKD2 SNORD23 ENSG00000268746
GH19F048319 0.2 ENCODE 22 +568.1 568089 8.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A YBX1 FEZF1 ZNF2 KDELR1 SNORD23 RPL18 GLTSCR2-AS1 GRWD1 TMEM143 CCDC114 EMP3 CYTH2 ENSG00000268746
GH19F048612 0.2 ENCODE 21.9 +860.9 860910 7.8 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 KDELR1 GRWD1 PRR12 SNORD35A ENSG00000269321 ALDH16A1 SNORD35B TEAD2 RPS11 RPL18
GH19F047105 1 FANTOM5 ENCODE 21.9 -645.6 -645557 9.2 CREB3L1 MLX YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 NFYC CCDC9 ZC3H4 C5AR2 PRKD2 GLTSCR1 SNORD23 DHX34 TPRX2P ELSPBP1 GLTSCR2-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD23 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD23 Gene

Chromosome:
19
Start:
47,755,853 bp from pter
End:
47,755,962 bp from pter
Size:
110 bases
Orientation:
Plus strand

Genomic View for SNORD23 Gene

Genes around SNORD23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD23 Gene

Proteins for SNORD23 Gene

Post-translational modifications for SNORD23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD23 Gene

Domains & Families for SNORD23 Gene

Gene Families for SNORD23 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD23: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD23 Gene

Function for SNORD23 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD23 Gene

Localization for SNORD23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD23 Gene

Pathways & Interactions for SNORD23 Gene

SuperPathways for SNORD23 Gene

No Data Available

Interacting Proteins for SNORD23 Gene

Gene Ontology (GO) - Biological Process for SNORD23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD23 Gene

Transcripts for SNORD23 Gene

mRNA/cDNA for SNORD23 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD23 Gene

No ASD Table

Relevant External Links for SNORD23 Gene

GeneLoc Exon Structure for
SNORD23
ECgene alternative splicing isoforms for
SNORD23

Expression for SNORD23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD23 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD23 Gene:

SNORD23

SOURCE GeneReport for Unigene cluster for SNORD23 Gene:

Hs.745561
genes like me logo Genes that share expression patterns with SNORD23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD23 Gene

Orthologs for SNORD23 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD23 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD23 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD23 35
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord23 35
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD23 35
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD23 35
  • 65 (a)
OneToOne
Species where no ortholog for SNORD23 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD23 Gene

ENSEMBL:
Gene Tree for SNORD23 (if available)
TreeFam:
Gene Tree for SNORD23 (if available)

Paralogs for SNORD23 Gene

No data available for Paralogs for SNORD23 Gene

Variants for SNORD23 Gene

Sequence variations from dbSNP and Humsavar for SNORD23 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10403946 -- 47,754,690(+) TGACA(C/T)TGCAC intron-variant, upstream-variant-2KB
rs10405135 -- 47,755,321(+) GCCTG(A/G)GCCCT intron-variant, upstream-variant-2KB
rs10406879 -- 47,755,294(+) GAAGG(C/T)CTCCC intron-variant, upstream-variant-2KB
rs10411523 -- 47,755,569(+) GGGCC(A/G)GGTCC intron-variant, upstream-variant-2KB
rs10412077 -- 47,756,015(+) GAGTC(C/T)GGGAC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD23 Gene

Variant ID Type Subtype PubMed ID
esv3644559 CNV gain 21293372
nsv1058351 CNV gain 25217958
nsv1059189 CNV gain 25217958

Relevant External Links for SNORD23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD23 Gene

Disorders for SNORD23 Gene

Relevant External Links for SNORD23

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD23

No disorders were found for SNORD23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD23 Gene

Publications for SNORD23 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD23 Gene

Sources for SNORD23 Gene

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