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Aliases for SNORD23 Gene

Subcategory (RNA class) for SNORD23 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD23 Gene

  • Small Nucleolar RNA, C/D Box 23 2 3 5
  • HBII-115 3

External Ids for SNORD23 Gene

ORGUL Members for SNORD23 Gene

Previous GeneCards Identifiers for SNORD23 Gene

  • GC19U900582
  • GC19P052941
  • GC19P048259
  • GC19P044685

Summaries for SNORD23 Gene

GeneCards Summary for SNORD23 Gene

SNORD23 (Small Nucleolar RNA, C/D Box 23) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD23 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD23 Gene

Genomics for SNORD23 Gene

GeneHancer (GH) Regulatory Elements for SNORD23 Gene

Promoters and enhancers for SNORD23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I047754 Enhancer 0.2 dbSUPER 550.8 -1.5 -1451 0.5 GC19P047756 SNORD23 SELENOW PIR37560 NOP53
GH19I047225 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 37.4 -526.5 -526472 8.2 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 BBC3 ZC3H4 BICRA ENSG00000268810 NOP53-AS1 CCDC9 NOP53 SNORD23 PPP5D1 ENSG00000269124
GH19I048253 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 29.5 +501.6 501599 7.1 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 MEF2D CARD8-AS1 CARD8 BICRA KDELR1 GRWD1 SNRNP70 NOP53-AS1 NOP53 RPL18 SNORD23
GH19I048612 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 29.5 +860.9 860909 7.8 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 RPL18 FAM83E SPHK2 PIR55128 PRR12 PIH1D1 SNORD35A SNORD35B ALDH16A1 KDELR1
GH19I046782 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 29.5 -970.1 -970071 6.8 MLX FEZF1 DMAP1 ZNF213 E2F8 ZNF143 ZNF263 SP3 NFYC ZFP41 SLC1A5 CCDC61 ZC3H4 CCDC9 BICRA NOP53-AS1 ENSG00000269148 PRKD2 SNORD23 ENSG00000268810
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD23 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD23 gene promoter:

Genomic Locations for SNORD23 Gene

Genomic Locations for SNORD23 Gene
chr19:47,755,853-47,755,962
(GRCh38/hg38)
Size:
110 bases
Orientation:
Plus strand
chr19:48,259,110-48,259,219
(GRCh37/hg19)

Genomic View for SNORD23 Gene

Genes around SNORD23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD23 Gene

Proteins for SNORD23 Gene

Post-translational modifications for SNORD23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD23 Gene

Domains & Families for SNORD23 Gene

Gene Families for SNORD23 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD23: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD23 Gene

Function for SNORD23 Gene

Phenotypes From GWAS Catalog for SNORD23 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD23 Gene

Localization for SNORD23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD23 Gene

Pathways & Interactions for SNORD23 Gene

SuperPathways for SNORD23 Gene

No Data Available

Interacting Proteins for SNORD23 Gene

Gene Ontology (GO) - Biological Process for SNORD23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD23 Gene

Drugs & Compounds for SNORD23 Gene

No Compound Related Data Available

Transcripts for SNORD23 Gene

mRNA/cDNA for SNORD23 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD23 Gene

No ASD Table

Relevant External Links for SNORD23 Gene

GeneLoc Exon Structure for
SNORD23
ECgene alternative splicing isoforms for
SNORD23

Expression for SNORD23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD23 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD23 Gene:

SNORD23

SOURCE GeneReport for Unigene cluster for SNORD23 Gene:

Hs.745561
genes like me logo Genes that share expression patterns with SNORD23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD23 Gene

Orthologs for SNORD23 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD23 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD23 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD23 34
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord23 34
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD23 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD23 34
  • 65 (a)
OneToOne
Species where no ortholog for SNORD23 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD23 Gene

ENSEMBL:
Gene Tree for SNORD23 (if available)
TreeFam:
Gene Tree for SNORD23 (if available)

Paralogs for SNORD23 Gene

No data available for Paralogs for SNORD23 Gene

Variants for SNORD23 Gene

Sequence variations from dbSNP and Humsavar for SNORD23 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1003791586 -- 47,755,218(+) T/C upstream_transcript_variant
rs1004495403 -- 47,753,905(+) C/T upstream_transcript_variant
rs1005066069 -- 47,756,280(+) C/G/T downstream_transcript_variant
rs1005811039 -- 47,755,477(+) C/T upstream_transcript_variant
rs1006267444 -- 47,756,412(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD23 Gene

Variant ID Type Subtype PubMed ID
esv3644559 CNV gain 21293372
nsv1058351 CNV gain 25217958
nsv1059189 CNV gain 25217958

Additional Variant Information for SNORD23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD23 Gene

Disorders for SNORD23 Gene

Additional Disease Information for SNORD23

No disorders were found for SNORD23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD23 Gene

Publications for SNORD23 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD23 Gene

Sources for SNORD23 Gene

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