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Aliases for SNORD22 Gene

Subcategory (RNA class) for SNORD22 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD22 Gene

  • Small Nucleolar RNA, C/D Box 22 2 3 5
  • RNA, U22 Small Nucleolar 2 3
  • RNU22 3
  • U22 3

External Ids for SNORD22 Gene

ORGUL Members for SNORD22 Gene

Previous HGNC Symbols for SNORD22 Gene

  • RNU22

Previous GeneCards Identifiers for SNORD22 Gene

  • GC11M062393
  • GC11M062401
  • GC11M062411
  • GC11M062420
  • GC11M062621
  • GC11M058949
  • GC11M062664
  • GC11M062856
  • GC11M062865
  • GC11M062873
  • GC11M062881
  • GC11M062889
  • GC11M062897
  • GC11M062905

Summaries for SNORD22 Gene

GeneCards Summary for SNORD22 Gene

SNORD22 (Small Nucleolar RNA, C/D Box 22) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD22 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD22 Gene

Genomics for SNORD22 Gene

GeneHancer (GH) Regulatory Elements for SNORD22 Gene

Promoters and enhancers for SNORD22 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I062851 Enhancer 1.1 Ensembl ENCODE 550.8 +1.2 1178 1.6 HNRNPUL1 PKNOX1 SMAD1 FOXA2 ARNT NSD2 TCF12 POLR2B E2F8 PAF1 GC11M062921 GC11M062922 GC11M062924 SNORD22 SNORD30 SNORD31 SNHG1 NXF1 UBXN1 CSKMT
GH11I062878 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.9 -28.8 -28798 5.9 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC3A2 SNHG1 TAF6L GANAB NXF1 CSKMT EML3 STX5 INTS5 MTA2
GH11I062887 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.7 -36.7 -36724 4 PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 TCF12 ZNF121 POLR2B BSCL2 TAF6L SLC3A2 SNHG1 SNORD28 TUT1 SNORD22 SLC22A6 AHNAK TTC9C
GH11I062712 Enhancer 0.9 ENCODE dbSUPER 10.2 +139.1 139109 3.5 FOXA2 MAX RAD21 YY1 FOSL1 ZNF316 CBFA2T2 ZNF600 NFE2 RXRA PIR38618 TTC9C UBXN1 LBHD1 LRRN4CL POLR2G GANAB B3GAT3 UQCC3 ROM1
GH11I062694 Enhancer 0.7 ENCODE 10.5 +158.2 158170 1.1 MEIS2 CTCF RB1 BACH1 SIN3A RAD21 CC2D1A POLR2A EGR1 ARID2 BSCL2 TTC9C LBHD1 CSKMT ENSG00000255432 SNORA57 INTS5 GANAB UQCC3 EML3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD22 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD22 gene promoter:

Genomic Locations for SNORD22 Gene

Genomic Locations for SNORD22 Gene
chr11:62,852,910-62,853,035
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)

Genomic View for SNORD22 Gene

Genes around SNORD22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD22 Gene

Proteins for SNORD22 Gene

Post-translational modifications for SNORD22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD22 Gene

Domains & Families for SNORD22 Gene

Gene Families for SNORD22 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD22: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD22 Gene

Function for SNORD22 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD22 Gene

Localization for SNORD22 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD22 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD22 Gene

Pathways & Interactions for SNORD22 Gene

SuperPathways for SNORD22 Gene

No Data Available

Interacting Proteins for SNORD22 Gene

Gene Ontology (GO) - Biological Process for SNORD22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD22 Gene

Drugs & Compounds for SNORD22 Gene

No Compound Related Data Available

Transcripts for SNORD22 Gene

mRNA/cDNA for SNORD22 Gene

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD22 Gene

No ASD Table

Relevant External Links for SNORD22 Gene

GeneLoc Exon Structure for
SNORD22
ECgene alternative splicing isoforms for
SNORD22

Expression for SNORD22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD22 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD22 Gene:

SNORD22

SOURCE GeneReport for Unigene cluster for SNORD22 Gene:

Hs.744737
genes like me logo Genes that share expression patterns with SNORD22: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD22 Gene

Orthologs for SNORD22 Gene

Evolution for SNORD22 Gene

ENSEMBL:
Gene Tree for SNORD22 (if available)
TreeFam:
Gene Tree for SNORD22 (if available)

No data available for Orthologs for SNORD22 Gene

Paralogs for SNORD22 Gene

No data available for Paralogs for SNORD22 Gene

Variants for SNORD22 Gene

Sequence variations from dbSNP and Humsavar for SNORD22 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1003373675 -- 62,852,614(-) G/A downstream_transcript_variant
rs1003457092 -- 62,853,276(-) C/G upstream_transcript_variant
rs1003477388 -- 62,853,524(-) T/C upstream_transcript_variant
rs1005826803 -- 62,854,068(-) A/C upstream_transcript_variant
rs1006912266 -- 62,853,601(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD22 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD22 Gene

Disorders for SNORD22 Gene

Additional Disease Information for SNORD22

No disorders were found for SNORD22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD22 Gene

Publications for SNORD22 Gene

  1. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 2 3 22 58
  2. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 22 58
  3. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. (PMID: 7985025) Tycowski KT … Steitz JA (Science (New York, N.Y.) 1994) 3 22 58
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD22 Gene

Sources for SNORD22 Gene

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