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Aliases for SNORD22 Gene

Subcategory (RNA class) for SNORD22 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD22 Gene

  • Small Nucleolar RNA, C/D Box 22 2 3 5
  • RNA, U22 Small Nucleolar 2 3
  • RNU22 3
  • U22 3

External Ids for SNORD22 Gene

ORGUL Members for SNORD22 Gene

Previous HGNC Symbols for SNORD22 Gene

  • RNU22

Previous GeneCards Identifiers for SNORD22 Gene

  • GC11M062393
  • GC11M062401
  • GC11M062411
  • GC11M062420
  • GC11M062621
  • GC11M058949
  • GC11M062664
  • GC11M062856
  • GC11M062865
  • GC11M062873
  • GC11M062881

Summaries for SNORD22 Gene

GeneCards Summary for SNORD22 Gene

SNORD22 (Small Nucleolar RNA, C/D Box 22) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD22 Gene

Genomics for SNORD22 Gene

Regulatory Elements for SNORD22 Gene

Enhancers for SNORD22 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F062887 1.3 Ensembl ENCODE 10.6 -36.7 -36725 4.0 PKNOX1 MLX ARID4B DMAP1 ZNF121 PAF1 PPARG SSRP1 SMARCA4 MYNN BSCL2 TAF6L INTS5 NXF1 UBXN1 METTL12 SLC3A2 SNHG1 SNORD28 SNORD22
GH11F062878 1.2 ENCODE 10.8 -28.8 -28798 5.9 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SNHG1 SCGB1D1 EEF1DP8 ENSG00000203520 INTS5 NXF1 UBXN1 SLC3A2 SNORD28 ENSG00000257002
GH11F062694 0.9 ENCODE 10.5 +158.2 158171 1.1 HDGF HDAC1 PKNOX1 SIN3A PTRF RAD21 ZNF143 CREM EGR2 ZNF654 BSCL2 TTC9C LBHD1 ENSG00000255432 METTL12 SNORA57 INTS5 GANAB UQCC3 EML3
GH11F062712 0.9 ENCODE 10.2 +139.1 139110 3.5 ELF3 RAD21 YY1 CREM CEBPB PPARG NR2F2 ETV4 CEBPA ZBTB33 TTC9C UBXN1 LBHD1 LRRN4CL POLR2G GANAB B3GAT3 EML3 ROM1 UQCC3
GH11F062750 0.5 ENCODE 10.2 +101.9 101926 0.4 POLR2A PRDM10 ZNF384 HNRNPUL2 HNRNPUL2-BSCL2 TTC9C TAF6L SNHG1 SNORD22 SLC3A2 AHNAK GANAB GC11M062755
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD22 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD22 Gene

Chromosome:
11
Start:
62,852,910 bp from pter
End:
62,853,035 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for SNORD22 Gene

Genes around SNORD22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD22 Gene

Proteins for SNORD22 Gene

Post-translational modifications for SNORD22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD22 Gene

Domains & Families for SNORD22 Gene

Gene Families for SNORD22 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD22: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD22 Gene

Function for SNORD22 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD22 Gene

Localization for SNORD22 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD22 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORD22 Gene

Pathways & Interactions for SNORD22 Gene

SuperPathways for SNORD22 Gene

No Data Available

Interacting Proteins for SNORD22 Gene

Gene Ontology (GO) - Biological Process for SNORD22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD22 Gene

Transcripts for SNORD22 Gene

mRNA/cDNA for SNORD22 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD22 Gene

No ASD Table

Relevant External Links for SNORD22 Gene

GeneLoc Exon Structure for
SNORD22
ECgene alternative splicing isoforms for
SNORD22

Expression for SNORD22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD22 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD22 Gene:

SNORD22

SOURCE GeneReport for Unigene cluster for SNORD22 Gene:

Hs.744737
genes like me logo Genes that share expression patterns with SNORD22: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD22 Gene

Orthologs for SNORD22 Gene

Evolution for SNORD22 Gene

ENSEMBL:
Gene Tree for SNORD22 (if available)
TreeFam:
Gene Tree for SNORD22 (if available)

No data available for Orthologs for SNORD22 Gene

Paralogs for SNORD22 Gene

No data available for Paralogs for SNORD22 Gene

Variants for SNORD22 Gene

Sequence variations from dbSNP and Humsavar for SNORD22 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs112160632 -- 62,852,899(+) TATAG(A/G/T)AATCT intron-variant, downstream-variant-500B
rs116903521 -- 62,854,285(+) TTGGA(A/G)CAGAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs137962897 -- 62,854,978(+) AAAAA(C/T)AGTCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs138508109 -- 62,855,011(+) TCTCT(C/T)ACTTC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs139131039 -- 62,852,774(+) TTGCT(A/G)TTATA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD22 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Relevant External Links for SNORD22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD22 Gene

Disorders for SNORD22 Gene

Relevant External Links for SNORD22

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD22

No disorders were found for SNORD22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD22 Gene

Publications for SNORD22 Gene

  1. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey M.R. … Matera A.G. (Histochem. Cell Biol. 1997) 2 3 22 64
  2. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski K.T. … Steitz J.A. (Nature 1996) 2 3 22 64
  3. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. (PMID: 7985025) Tycowski K.T. … Steitz J.A. (Science 1994) 3 22 64
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD22 Gene

Sources for SNORD22 Gene

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