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Aliases for SNORD20 Gene

Subcategory (RNA class) for SNORD20 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD20 Gene

  • Small Nucleolar RNA, C/D Box 20 2 3
  • RNA, U20 Small Nucleolar 2 3
  • RNA, U20 Small Nuclear 3
  • RNU20 3
  • U20 3

External Ids for SNORD20 Gene

Previous HGNC Symbols for SNORD20 Gene

  • RNU20

Previous GeneCards Identifiers for SNORD20 Gene

  • GC02M232029
  • GC02M232321
  • GC02M224162

Summaries for SNORD20 Gene

GeneCards Summary for SNORD20 Gene

SNORD20 (Small Nucleolar RNA, C/D Box 20) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD20 Gene

Genomics for SNORD20 Gene

Regulatory Elements for SNORD20 Gene

Transcription factor binding sites by QIAGEN in the SNORD20 gene promoter:

Genomic Location for SNORD20 Gene

Start:
231,456,444 bp from pter
End:
231,456,523 bp from pter
Size:
80 bases
Orientation:
Minus strand

Genomic View for SNORD20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD20 Gene

Proteins for SNORD20 Gene

Post-translational modifications for SNORD20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD20 Gene

Domains for SNORD20 Gene

Gene Families for SNORD20 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD20: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD20 Gene

Function for SNORD20 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD20 Gene

Localization for SNORD20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD20 Gene

Pathways for SNORD20 Gene

SuperPathways for SNORD20 Gene

No Data Available

Interacting Proteins for SNORD20 Gene

Gene Ontology (GO) - Biological Process for SNORD20 Gene

None

No data available for Pathways by source for SNORD20 Gene

Transcripts for SNORD20 Gene

mRNA/cDNA for SNORD20 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD20 Gene

No ASD Table

Relevant External Links for SNORD20 Gene

GeneLoc Exon Structure for
SNORD20
ECgene alternative splicing isoforms for
SNORD20

Expression for SNORD20 Gene

mRNA expression in normal human tissues for SNORD20 Gene

genes like me logo Genes that share expressions with SNORD20: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD20 Gene

Orthologs for SNORD20 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD20 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD20 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD20 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD20 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24148 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD20 36
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD20 36
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD20 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD20 36
  • 67 (a)
OneToOne
Species with no ortholog for SNORD20:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD20 Gene

ENSEMBL:
Gene Tree for SNORD20 (if available)
TreeFam:
Gene Tree for SNORD20 (if available)

Paralogs for SNORD20 Gene

No data available for Paralogs for SNORD20 Gene

Variants for SNORD20 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD20 Gene

Variant ID Type Subtype PubMed ID
nsv834567 CNV Gain 17160897

Relevant External Links for SNORD20 Gene

HapMap Linkage Disequilibrium report
SNORD20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD20 Gene

Disorders for SNORD20 Gene

No disorders were found for SNORD20 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD20 Gene

Publications for SNORD20 Gene

  1. U20, a novel small nucleolar RNA, is encoded in an intron of the nucleolin gene in mammals. (PMID: 8065311) Nicoloso M. … Bachellerie J.P. (Mol. Cell. Biol. 1994) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. Genomic organization and chromosomal localization of the human nucleolin gene. (PMID: 2394707) Srivastava M. … Burns A.L. (J. Biol. Chem. 1990) 3

Products for SNORD20 Gene

Sources for SNORD20 Gene

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