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Aliases for SNORD2 Gene

Subcategory (RNA class) for SNORD2 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD2 Gene

  • Small Nucleolar RNA, C/D Box 2 2 3 5
  • SnR39B Small Nucleolar RNA 3
  • SnR39B SnoRNA 3
  • SNR39B 3
  • R39B 3

External Ids for SNORD2 Gene

ORGUL Members for SNORD2 Gene

Previous GeneCards Identifiers for SNORD2 Gene

  • GC03P187985
  • GC03P186501
  • GC03P186518
  • GC03P186542
  • GC03P186569

Summaries for SNORD2 Gene

GeneCards Summary for SNORD2 Gene

SNORD2 (Small Nucleolar RNA, C/D Box 2) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD2 Gene

Genomics for SNORD2 Gene

Regulatory Elements for SNORD2 Gene

Enhancers for SNORD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H186588 1.2 Ensembl ENCODE 10.8 -194.9 -194883 3 PKNOX1 FOXA2 ARNT BRCA1 RAD21 RARA GTF3C2 SLC30A9 ZNF366 SCRT2 ENSG00000200418 TRA2B TBCCD1 AHSG SNORD2 EIF4A2 SNORA63 SNORA81 SNORA4 RFC4
GH03H186821 0.9 Ensembl ENCODE 11.3 +36.9 36887 0 SMARCA5 CTCF ZNF654 TRIM22 REST RAD21 ZNF592 RFX5 EGR1 ZNF143 SNORA63 EIF4A2 SNORA81 ENSG00000200418 ADIPOQ SNORD2 AHSG KNG1 ADIPOQ-AS1 LINC02043
GH03H186822 0.5 ENCODE 11.3 +37.4 37391 0 HIC1 CTCF GLIS1 SCRT2 SNORA63 SNORA81 ENSG00000200418 EIF4A2 ADIPOQ SNORD2 AHSG KNG1 ADIPOQ-AS1 LINC02043
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD2 Gene

Chromosome:
3
Start:
186,784,796 bp from pter
End:
186,784,865 bp from pter
Size:
70 bases
Orientation:
Plus strand

Genomic View for SNORD2 Gene

Genes around SNORD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD2 Gene

Proteins for SNORD2 Gene

Post-translational modifications for SNORD2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD2 Gene

Domains & Families for SNORD2 Gene

Gene Families for SNORD2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD2 Gene

Function for SNORD2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD2 Gene

Localization for SNORD2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD2 Gene

Pathways & Interactions for SNORD2 Gene

SuperPathways for SNORD2 Gene

No Data Available

Interacting Proteins for SNORD2 Gene

Gene Ontology (GO) - Biological Process for SNORD2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD2 Gene

Drugs & Compounds for SNORD2 Gene

No Compound Related Data Available

Transcripts for SNORD2 Gene

mRNA/cDNA for SNORD2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD2 Gene

No ASD Table

Relevant External Links for SNORD2 Gene

GeneLoc Exon Structure for
SNORD2
ECgene alternative splicing isoforms for
SNORD2

Expression for SNORD2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD2 Gene:

SNORD2
genes like me logo Genes that share expression patterns with SNORD2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD2 Gene

Orthologs for SNORD2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORD2 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD2 34
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNORD2 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord2 34
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD2 34
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD2 34
  • 68 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD2 34
  • 80 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD2 34
  • 81 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD2 34 34 34
  • 62 (a)
ManyToMany
Species where no ortholog for SNORD2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD2 Gene

ENSEMBL:
Gene Tree for SNORD2 (if available)
TreeFam:
Gene Tree for SNORD2 (if available)

Paralogs for SNORD2 Gene

No data available for Paralogs for SNORD2 Gene

Variants for SNORD2 Gene

Sequence variations from dbSNP and Humsavar for SNORD2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000181570 -- 186,783,198(+) CGGCC(G/T)CCCGA upstream-variant-2KB
rs1001803516 -- 186,783,760(+) CAGCA(C/T)TCCTG intron-variant, upstream-variant-2KB
rs1003727296 -- 186,783,205(+) CCGAC(G/T)AACAG upstream-variant-2KB
rs1003830971 -- 186,783,229(+) CGCCT(C/G)CGGCT upstream-variant-2KB
rs1004351293 -- 186,783,557(+) AAAAC(C/G)GGTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD2 Gene

Variant ID Type Subtype PubMed ID
dgv5005n100 CNV gain 25217958
esv2759206 CNV loss 17122850
esv34136 CNV loss 18971310
nsv1012615 CNV gain 25217958

Relevant External Links for SNORD2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD2 Gene

Disorders for SNORD2 Gene

Relevant External Links for SNORD2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD2

No disorders were found for SNORD2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD2 Gene

Publications for SNORD2 Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3 60
  2. A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2. (PMID: 24105470) Wu Y … Tai ES (Human molecular genetics 2014) 3 60
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD2 Gene

Sources for SNORD2 Gene

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