Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD1B Gene

Subcategory (RNA class) for SNORD1B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD1B Gene

  • Small Nucleolar RNA, C/D Box 1B 2 3
  • R38b SnoRNA 3
  • SnR38B 3
  • R38B 3

External Ids for SNORD1B Gene

ORGUL Members for SNORD1B Gene

Previous GeneCards Identifiers for SNORD1B Gene

  • GC17U900725
  • GC17P072077
  • GC17P074558
  • GC17P069984
  • GC17P074561
  • GC17P074576
  • GC17P074590
  • GC17P074602

Summaries for SNORD1B Gene

GeneCards Summary for SNORD1B Gene

SNORD1B (Small Nucleolar RNA, C/D Box 1B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD1B Gene

Genomics for SNORD1B Gene

Regulatory Elements for SNORD1B Gene

Genomic Location for SNORD1B Gene

Start:
76,561,108 bp from pter
End:
76,561,193 bp from pter
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD1B Gene

Proteins for SNORD1B Gene

Post-translational modifications for SNORD1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD1B Gene

Domains for SNORD1B Gene

Gene Families for SNORD1B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD1B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD1B Gene

Function for SNORD1B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD1B Gene

Localization for SNORD1B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD1B Gene

Pathways for SNORD1B Gene

SuperPathways for SNORD1B Gene

No Data Available

Interacting Proteins for SNORD1B Gene

Gene Ontology (GO) - Biological Process for SNORD1B Gene

None

No data available for Pathways by source for SNORD1B Gene

Transcripts for SNORD1B Gene

mRNA/cDNA for SNORD1B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD1B Gene

No ASD Table

Relevant External Links for SNORD1B Gene

GeneLoc Exon Structure for
SNORD1B
ECgene alternative splicing isoforms for
SNORD1B

Expression for SNORD1B Gene

mRNA expression in normal human tissues for SNORD1B Gene

genes like me logo Genes that share expressions with SNORD1B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD1B Gene

Orthologs for SNORD1B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoR38 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoR38 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoR38 36
  • 68 (a)
OneToMany
snoR38 36
  • 85 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snord1a 36
  • 61 (a)
OneToOne
Snord1b 16
oppossum
(Monodelphis domestica)
Mammalia snoR38 36
  • 64 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoR38 36
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia snoR38 36
  • 62 (a)
OneToMany
snoR38 36
  • 65 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii snoR38 36
  • 59 (a)
OneToOne
Species with no ortholog for SNORD1B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD1B Gene

ENSEMBL:
Gene Tree for SNORD1B (if available)
TreeFam:
Gene Tree for SNORD1B (if available)

Paralogs for SNORD1B Gene

No data available for Paralogs for SNORD1B Gene

Variants for SNORD1B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD1B Gene

Variant ID Type Subtype PubMed ID
nsv908831 CNV Loss 21882294
nsv828107 CNV Loss 20364138

Relevant External Links for SNORD1B Gene

HapMap Linkage Disequilibrium report
SNORD1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD1B Gene

Disorders for SNORD1B Gene

No disorders were found for SNORD1B Gene.

No data available for UniProtKB/Swiss-Prot for SNORD1B Gene

Publications for SNORD1B Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H. … Qu L.H. (Gene 2004) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD1B Gene

Sources for SNORD1B Gene

Back to Top

Content