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Aliases for SNORD1A Gene

Subcategory (RNA class) for SNORD1A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD1A Gene

  • Small Nucleolar RNA, C/D Box 1A 2 3
  • R38a SnoRNA 3
  • SnR38A 3
  • R38A 3

External Ids for SNORD1A Gene

ORGUL Members for SNORD1A Gene

Previous GeneCards Identifiers for SNORD1A Gene

  • GC17U900724
  • GC17P072078
  • GC17P074557
  • GC17P069985
  • GC17P074588

Summaries for SNORD1A Gene

GeneCards Summary for SNORD1A Gene

SNORD1A (Small Nucleolar RNA, C/D Box 1A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD1A Gene

Genomics for SNORD1A Gene

Regulatory Elements for SNORD1A Gene

Genomic Location for SNORD1A Gene

Start:
76,561,633 bp from pter
End:
76,561,706 bp from pter
Size:
74 bases
Orientation:
Plus strand

Genomic View for SNORD1A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD1A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD1A Gene

Proteins for SNORD1A Gene

Post-translational modifications for SNORD1A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD1A Gene

Domains for SNORD1A Gene

Gene Families for SNORD1A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD1A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD1A Gene

Function for SNORD1A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD1A Gene

Localization for SNORD1A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD1A Gene

Pathways for SNORD1A Gene

SuperPathways for SNORD1A Gene

No Data Available

Interacting Proteins for SNORD1A Gene

Gene Ontology (GO) - Biological Process for SNORD1A Gene

None

No data available for Pathways by source for SNORD1A Gene

Transcripts for SNORD1A Gene

mRNA/cDNA for SNORD1A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD1A Gene

No ASD Table

Relevant External Links for SNORD1A Gene

GeneLoc Exon Structure for
SNORD1A
ECgene alternative splicing isoforms for
SNORD1A

Expression for SNORD1A Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD1A Gene

Orthologs for SNORD1A Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD1A Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord1a 16
Species with no ortholog for SNORD1A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD1A Gene

ENSEMBL:
Gene Tree for SNORD1A (if available)
TreeFam:
Gene Tree for SNORD1A (if available)

Paralogs for SNORD1A Gene

No data available for Paralogs for SNORD1A Gene

Variants for SNORD1A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD1A Gene

Variant ID Type Subtype PubMed ID
nsv828107 CNV Loss 20364138

Relevant External Links for SNORD1A Gene

HapMap Linkage Disequilibrium report
SNORD1A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD1A Gene

Disorders for SNORD1A Gene

No disorders were found for SNORD1A Gene.

No data available for UniProtKB/Swiss-Prot for SNORD1A Gene

Publications for SNORD1A Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H. … Qu L.H. (Gene 2004) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD1A Gene

Sources for SNORD1A Gene

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