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Aliases for SNORD19B Gene

Subcategory (RNA class) for SNORD19B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD19B Gene

  • Small Nucleolar RNA, C/D Box 19B 2 3 5

External Ids for SNORD19B Gene

ORGUL Members for SNORD19B Gene

Previous GeneCards Identifiers for SNORD19B Gene

  • GC03U900868
  • GC03P052704
  • GC03P052705
  • GC03P052706
  • GC03P052717
  • GC03P052727
  • GC03P052728
  • GC03P052729
  • GC03P052730
  • GC03P052707
  • GC03P052712
  • GC03P052731
  • GC03P052740

Summaries for SNORD19B Gene

GeneCards Summary for SNORD19B Gene

SNORD19B (Small Nucleolar RNA, C/D Box 19B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD19B Gene

Genomics for SNORD19B Gene

Regulatory Elements for SNORD19B Gene

Enhancers for SNORD19B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F052719 1.4 Ensembl ENCODE 11.4 +30.7 30710 3.1 CBX3 ZNF680 MAX ZNF316 CBX5 EED TRIM24 MYC MAFK ZNF558 PBRM1 GNL3 SNORD69 ENSG00000222345 ENSG00000252787 SNORD19 SNORD19B ITIH1 STAB1 SFMBT1
GH03F052648 0.2 ENCODE 11.3 -40.9 -40872 2.1 HDAC1 ZNF266 CEBPG YY1 KAT2B GATA2 HNF4G SIRT6 NFE2 PRDM10 PBRM1 GNL3 ENSG00000252787 SNORD19 ENSG00000222345 SNORD19B SNORD69 ITIH3 RNU6ATAC16P
GH03F052606 0.8 ENCODE 10.9 -84.0 -83951 1.5 PKNOX1 SAP130 JUN RFX5 ZNF316 ZNF366 NFE2 FOSL2 FOS MAFK PBRM1 RNU6-856P GNL3 ENSG00000222345 ENSG00000252787 SNORD19 SNORD19B SNORD69 RNU6ATAC16P
GH03F052466 1.3 VISTA FANTOM5 10.8 -222.6 -222558 3.0 ZNF740 MNT ZIC2 ZNF623 NR2F2 ZNF121 POLR2A SMARCA4 ZNF652 PRDM1 NT5DC2 SEMA3G STAB1 SMIM4 RNU6-856P RNU6ATAC16P PBRM1 GNL3 ENSG00000222345 ENSG00000252787
GH03F052752 0.2 Ensembl 10.5 +61.6 61563 0.2 SOX13 ELF3 DRAP1 ZNF792 BACH1 CEBPG ZNF316 NFE2 CREM HOMEZ ITIH1 ITIH3 SNORD69 SNORD19 SNORD19B ENSG00000222345 ENSG00000252787 PBRM1 GNL3 MUSTN1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD19B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD19B Gene

Chromosome:
3
Start:
52,690,738 bp from pter
End:
52,690,830 bp from pter
Size:
93 bases
Orientation:
Plus strand

Genomic View for SNORD19B Gene

Genes around SNORD19B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD19B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD19B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD19B Gene

Proteins for SNORD19B Gene

Post-translational modifications for SNORD19B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD19B Gene

Domains & Families for SNORD19B Gene

Gene Families for SNORD19B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD19B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD19B Gene

Function for SNORD19B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD19B Gene

Localization for SNORD19B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD19B Gene

Pathways & Interactions for SNORD19B Gene

SuperPathways for SNORD19B Gene

No Data Available

Interacting Proteins for SNORD19B Gene

Gene Ontology (GO) - Biological Process for SNORD19B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD19B Gene

Transcripts for SNORD19B Gene

mRNA/cDNA for SNORD19B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD19B Gene

No ASD Table

Relevant External Links for SNORD19B Gene

GeneLoc Exon Structure for
SNORD19B
ECgene alternative splicing isoforms for
SNORD19B

Expression for SNORD19B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD19B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD19B Gene:

SNORD19B
genes like me logo Genes that share expression patterns with SNORD19B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD19B Gene

Orthologs for SNORD19B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD19B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD19B 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD19B 35
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD19B 35
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD19B 35
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24916 35
  • 77 (a)
OneToMany
Gm23852 35
  • 75 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD19B 35
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD19B 35
  • 58 (a)
OneToMany
Species where no ortholog for SNORD19B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD19B Gene

ENSEMBL:
Gene Tree for SNORD19B (if available)
TreeFam:
Gene Tree for SNORD19B (if available)

Paralogs for SNORD19B Gene

No data available for Paralogs for SNORD19B Gene

Variants for SNORD19B Gene

Sequence variations from dbSNP and Humsavar for SNORD19B Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1062164 -- 52,689,556(+) TAAAT(C/T)GGAAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112384763 -- 52,689,349(+) GCTAG(A/G)CAGTG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs114535630 -- 52,688,913(+) ACATT(A/C)TTCAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs138199111 -- 52,688,827(+) TATTT(A/G)CATTT intron-variant, upstream-variant-2KB
rs139690212 -- 52,689,941(+) CACTT(C/T)GTCTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD19B Gene

Variant ID Type Subtype PubMed ID
esv3596161 CNV loss 21293372

Relevant External Links for SNORD19B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD19B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD19B Gene

Disorders for SNORD19B Gene

Relevant External Links for SNORD19B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD19B

No disorders were found for SNORD19B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD19B Gene

Publications for SNORD19B Gene

  1. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) (Nat. Genet. 2011) 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SNORD19B Gene

Sources for SNORD19B Gene

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