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Aliases for SNORD19 Gene

Subcategory (RNA class) for SNORD19 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD19 Gene

  • Small Nucleolar RNA, C/D Box 19 2 3 5
  • HBII-108 3

External Ids for SNORD19 Gene

ORGUL Members for SNORD19 Gene

Previous GeneCards Identifiers for SNORD19 Gene

  • GC03U900638
  • GC03P052698
  • GC03P052723
  • GC03P052693
  • GC03P052710
  • GC03P052720
  • GC03P052737
  • GC03P052745

Summaries for SNORD19 Gene

GeneCards Summary for SNORD19 Gene

SNORD19 (Small Nucleolar RNA, C/D Box 19) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD19 Gene

Genomics for SNORD19 Gene

Regulatory Elements for SNORD19 Gene

Enhancers for SNORD19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G052890 1.5 FANTOM5 Ensembl ENCODE 9.6 +203.4 203385 4.3 HDGF ATF1 FOXA2 MLX ARID4B DMAP1 YY1 ZNF207 FOS MXD4 ITIH4 ENSG00000243696 ITIH4-AS1 PBRM1 MUSTN1 SNORD69 SNORD19B SNORD19 ENSG00000252787 ENSG00000222345
GH03G052466 1.2 VISTA FANTOM5 dbSUPER 10.8 -221.1 -221060 3.0 ZNF740 MNT ZNF623 ZIC2 NR2F2 ZNF121 SMARCA4 POLR2A ZNF652 PRDM1 NT5DC2 SEMA3G STAB1 SMIM4 RNU6-856P RNU6ATAC16P PBRM1 GNL3 SNORD69 SNORD19B
GH03G052719 1.1 Ensembl ENCODE dbSUPER 11.4 +32.2 32208 3.1 CBX3 ZNF680 MAX ZNF316 CBX5 EED TRIM24 MAFK MYC ZNF558 PBRM1 GNL3 SNORD69 SNORD19 SNORD19B ENSG00000252787 ENSG00000222345 ITIH1 STAB1 SFMBT1
GH03G052769 1.1 ENCODE 10.4 +81.6 81648 2.1 HDGF FOXA2 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 PBRM1 ITIH3 ITIH4-AS1 ITIH4 ENSG00000243696 SNORD69 GNL3 MUSTN1 ENSG00000222345 ENSG00000252787
GH03G052762 0.9 Ensembl ENCODE 10.5 +74.4 74353 1.5 PAF1 JUN CEBPB EP300 ZFHX2 JUND MAFF GATA2 STAT3 FOS PBRM1 ITIH3 SNORD69 GNL3 ENSG00000222345 ENSG00000252787 SNORD19 SNORD19B NEK4 LOC101059924
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD19 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD19 Gene

Chromosome:
3
Start:
52,689,240 bp from pter
End:
52,689,315 bp from pter
Size:
76 bases
Orientation:
Plus strand

Genomic View for SNORD19 Gene

Genes around SNORD19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD19 Gene

Proteins for SNORD19 Gene

Post-translational modifications for SNORD19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD19 Gene

Domains & Families for SNORD19 Gene

Gene Families for SNORD19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD19 Gene

Function for SNORD19 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD19 Gene

Localization for SNORD19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD19 Gene

Pathways & Interactions for SNORD19 Gene

SuperPathways for SNORD19 Gene

No Data Available

Interacting Proteins for SNORD19 Gene

Gene Ontology (GO) - Biological Process for SNORD19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD19 Gene

Transcripts for SNORD19 Gene

mRNA/cDNA for SNORD19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD19 Gene

No ASD Table

Relevant External Links for SNORD19 Gene

GeneLoc Exon Structure for
SNORD19
ECgene alternative splicing isoforms for
SNORD19

Expression for SNORD19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD19 Gene:

SNORD19
genes like me logo Genes that share expression patterns with SNORD19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD19 Gene

Orthologs for SNORD19 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD19 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD19 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord19 35
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD19 35
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD19 35
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD19 35
  • 70 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD19 35
  • 68 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD19 35
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD19 35
  • 66 (a)
OneToOne
Species where no ortholog for SNORD19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD19 Gene

ENSEMBL:
Gene Tree for SNORD19 (if available)
TreeFam:
Gene Tree for SNORD19 (if available)

Paralogs for SNORD19 Gene

No data available for Paralogs for SNORD19 Gene

Variants for SNORD19 Gene

Sequence variations from dbSNP and Humsavar for SNORD19 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1004621323 -- 52,687,815(+) AGACA(A/C)GGGCT intron-variant, upstream-variant-2KB
rs1005015433 -- 52,688,538(+) TGTAA(G/T)CATGA intron-variant, upstream-variant-2KB
rs1008288805 -- 52,689,601(+) TATGC(A/G)TCTGA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1009364130 -- 52,688,403(+) CTCCT(C/T)CCACC intron-variant, upstream-variant-2KB
rs1011544527 -- 52,689,025(+) GTTCT(G/T)ATCAT intron-variant, nc-transcript-variant, upstream-variant-2KB

Relevant External Links for SNORD19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD19 Gene

Disorders for SNORD19 Gene

Relevant External Links for SNORD19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD19

No disorders were found for SNORD19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD19 Gene

Publications for SNORD19 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3 64
  3. Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study. (PMID: 22763110) . … Loughlin J. (Lancet 2012) 3 64
  4. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) (Nat. Genet. 2011) 3 64
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD19 Gene

Sources for SNORD19 Gene

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