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Aliases for SNORD18C Gene

Subcategory (RNA class) for SNORD18C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD18C Gene

  • Small Nucleolar RNA, C/D Box 18C 2 3 5
  • U18C Small Nucleolar RNA 3
  • U18C SnoRNA 3
  • U18C 3

External Ids for SNORD18C Gene

ORGUL Members for SNORD18C Gene

Previous GeneCards Identifiers for SNORD18C Gene

  • GC15M064589
  • GC15M066793
  • GC15M043629

Summaries for SNORD18C Gene

GeneCards Summary for SNORD18C Gene

SNORD18C (Small Nucleolar RNA, C/D Box 18C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD18C Gene

Genomics for SNORD18C Gene

Regulatory Elements for SNORD18C Gene

Enhancers for SNORD18C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F066400 1.7 FANTOM5 Ensembl ENCODE 10.9 +94.6 94618 13.0 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 FOS TIPIN SNAPC5 ZWILCH SNORD16 DIS3L ENSG00000260773 HNRNPA1P44 ENSG00000259202 RPL4 SLC24A1
GH15F066452 1.1 Ensembl ENCODE 10.4 +48.1 48067 1.5 ZSCAN9 RARA GLIS2 CREM MIXL1 THAP11 CEBPB PPARG RCOR2 CEBPA MAP2K1 SNORD18C SNORD18B SNORD16 ZWILCH SNORD18A TIPIN ENSG00000261351 LOC105370868 RPL35AP32
GH15F066480 1 ENCODE 11.4 +20.1 20122 1.7 ARNT ZFP64 ARID4B SIN3A ZNF2 GLIS2 GATA2 DEK ZNF263 MXD4 DIS3L ZWILCH SNORD18A SNORD16 SNORD18C SNORD18B RPL4 MAP2K1 TIPIN ENSG00000261351
GH15F066393 0.7 Ensembl 11 +107.3 107318 2.0 BCOR CTCF TAL1 ZMYM3 CEBPB RAD21 YY1 ZNF121 GATA3 SCRT2 TIPIN SNAPC5 SNORD18C SNORD18B SNORD18A SNORD16 ZWILCH ENSG00000261351 MAP2K1 GC15M066415
GH15F066424 0.6 Ensembl 10.5 +76.0 76018 1.0 PKNOX1 MTA2 IKZF1 NBN BMI1 TBX21 EGR2 MAP2K1 SNAPC5 ZWILCH SNORD18C SNORD18B SNORD18A SNORD16 GC15M066420 PIR45084
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD18C on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD18C Gene

Chromosome:
15
Start:
66,501,250 bp from pter
End:
66,501,318 bp from pter
Size:
69 bases
Orientation:
Minus strand

Genomic View for SNORD18C Gene

Genes around SNORD18C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD18C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD18C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD18C Gene

Proteins for SNORD18C Gene

Post-translational modifications for SNORD18C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD18C Gene

Domains & Families for SNORD18C Gene

Gene Families for SNORD18C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD18C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD18C Gene

Function for SNORD18C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD18C Gene

Localization for SNORD18C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD18C Gene

Pathways & Interactions for SNORD18C Gene

SuperPathways for SNORD18C Gene

No Data Available

Interacting Proteins for SNORD18C Gene

Gene Ontology (GO) - Biological Process for SNORD18C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD18C Gene

Transcripts for SNORD18C Gene

mRNA/cDNA for SNORD18C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD18C Gene

No ASD Table

Relevant External Links for SNORD18C Gene

GeneLoc Exon Structure for
SNORD18C
ECgene alternative splicing isoforms for
SNORD18C

Expression for SNORD18C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD18C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD18C Gene:

SNORD18C
genes like me logo Genes that share expression patterns with SNORD18C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD18C Gene

Orthologs for SNORD18C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD18C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD18 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD18 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD18 35
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD18 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22455 35
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD18 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD18 35 35
  • 85 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD18 35
  • 82 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD18 35
  • 69 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD18 35 35 35 35
  • 70 (a)
ManyToMany
Species where no ortholog for SNORD18C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD18C Gene

ENSEMBL:
Gene Tree for SNORD18C (if available)
TreeFam:
Gene Tree for SNORD18C (if available)

Paralogs for SNORD18C Gene

No data available for Paralogs for SNORD18C Gene

Variants for SNORD18C Gene

Sequence variations from dbSNP and Humsavar for SNORD18C Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10851759 -- 66,501,699(+) TAAGG(A/C)TTAGC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs11071895 -- 66,501,142(+) GTATT(C/T)CAACA intron-variant, downstream-variant-500B
rs111563130 -- 66,500,931(+) CTTAG(A/C/T)ATATG intron-variant, downstream-variant-500B
rs112510270 -- 66,502,751(+) CACAT(C/G)TATTT downstream-variant-500B, upstream-variant-2KB, splice-acceptor-variant
rs112663147 -- 66,502,201(+) ATTCC(-/CT)GATTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD18C Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Relevant External Links for SNORD18C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD18C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD18C Gene

Disorders for SNORD18C Gene

Relevant External Links for SNORD18C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD18C

No disorders were found for SNORD18C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD18C Gene

Publications for SNORD18C Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. (PMID: 7507233) Prislei S. … Bozzoni I. (Nucleic Acids Res. 1993) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 3 64

Products for SNORD18C Gene

Sources for SNORD18C Gene

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