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Aliases for SNORD18C Gene

Subcategory (RNA class) for SNORD18C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD18C Gene

  • Small Nucleolar RNA, C/D Box 18C 2 3 5
  • U18C Small Nucleolar RNA 3
  • U18C SnoRNA 3
  • U18C 3

External Ids for SNORD18C Gene

ORGUL Members for SNORD18C Gene

Previous GeneCards Identifiers for SNORD18C Gene

  • GC15M064589
  • GC15M066793
  • GC15M043629

Summaries for SNORD18C Gene

GeneCards Summary for SNORD18C Gene

SNORD18C (Small Nucleolar RNA, C/D Box 18C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD18C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD18C Gene

Genomics for SNORD18C Gene

Regulatory Elements for SNORD18C Gene

Enhancers for SNORD18C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H066400 1.3 Ensembl ENCODE dbSUPER 10.5 +97.7 97657 6 HDGF BMI1 ETS1 ZNF366 SCRT2 ETV6 RUNX3 IKZF2 SMARCA5 YY2 TIPIN DIS3L SNAPC5 RPL4 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH GC15M066415
GH15H066408 1.3 FANTOM5 Ensembl dbSUPER 10.4 +92.4 92418 1 PKNOX1 SP5 HLF MAFG NFIL3 ZFHX2 ZNF316 MAFF IKZF1 ZNF600 SNAPC5 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH RPL4 DIS3L MAP2K1 LOC105370868
GH15H066452 1.1 Ensembl ENCODE 10.4 +48.1 48067 1 FOXA2 ZSCAN9 RAD21 RARA CREM MIXL1 THAP11 CEBPB PPARG NFIL3 MAP2K1 SNORD16 SNORD18B SNORD18C SNORD18A ZWILCH TIPIN ENSG00000261351 LOC105370868 RPL35AP32
GH15H066410 1 Ensembl ENCODE dbSUPER 10.9 +89.9 89928 1 IKZF1 MAX EMSY TIPIN SNAPC5 MAP2K1 SNORD18C SNORD16 SNORD18A SNORD18B ZWILCH RPL4 DIS3L
GH15H066480 0.8 ENCODE 11.4 +20.1 20122 1 BCOR HDAC1 CTCF LEF1 TBL1XR1 ARNT TAL1 ETV1 TCF12 E2F1 DIS3L SNORD16 SNORD18A ZWILCH SNORD18B SNORD18C RPL4 MAP2K1 TIPIN ENSG00000261351
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD18C on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD18C Gene

Chromosome:
15
Start:
66,501,250 bp from pter
End:
66,501,318 bp from pter
Size:
69 bases
Orientation:
Minus strand

Genomic View for SNORD18C Gene

Genes around SNORD18C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD18C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD18C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD18C Gene

Proteins for SNORD18C Gene

Post-translational modifications for SNORD18C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD18C Gene

Domains & Families for SNORD18C Gene

Gene Families for SNORD18C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD18C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD18C Gene

Function for SNORD18C Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD18C
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD18C Gene

Localization for SNORD18C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD18C Gene

Pathways & Interactions for SNORD18C Gene

SuperPathways for SNORD18C Gene

No Data Available

Interacting Proteins for SNORD18C Gene

Gene Ontology (GO) - Biological Process for SNORD18C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD18C Gene

Drugs & Compounds for SNORD18C Gene

No Compound Related Data Available

Transcripts for SNORD18C Gene

mRNA/cDNA for SNORD18C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD18C
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD18C Gene

No ASD Table

Relevant External Links for SNORD18C Gene

GeneLoc Exon Structure for
SNORD18C
ECgene alternative splicing isoforms for
SNORD18C

Expression for SNORD18C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD18C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD18C Gene:

SNORD18C
genes like me logo Genes that share expression patterns with SNORD18C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD18C Gene

Orthologs for SNORD18C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD18C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD18 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD18 34
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD18 34
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD18 34
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22455 34
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD18 34
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD18 34 34
  • 85 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD18 34
  • 82 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD18 34
  • 69 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD18 34 34 34 34
  • 70 (a)
ManyToMany
Species where no ortholog for SNORD18C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD18C Gene

ENSEMBL:
Gene Tree for SNORD18C (if available)
TreeFam:
Gene Tree for SNORD18C (if available)

Paralogs for SNORD18C Gene

No data available for Paralogs for SNORD18C Gene

Variants for SNORD18C Gene

Sequence variations from dbSNP and Humsavar for SNORD18C Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000194503 -- 66,500,899(+) GAATG(C/T)TAATA intron-variant, downstream-variant-500B
rs1000707260 -- 66,501,605(+) CACAA(G/T)AACTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000796328 -- 66,502,173(+) ACTTG(A/T)ATAGT intron-variant, upstream-variant-2KB
rs1004758338 -- 66,502,651(+) AGCCA(C/G)GGCAG downstream-variant-500B, upstream-variant-2KB, reference, missense
rs1008154406 -- 66,502,307(+) AGGTT(C/G)ACGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD18C Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Relevant External Links for SNORD18C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD18C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD18C Gene

Disorders for SNORD18C Gene

Relevant External Links for SNORD18C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD18C

No disorders were found for SNORD18C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD18C Gene

Publications for SNORD18C Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 60
  2. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. (PMID: 7507233) Prislei S … Bozzoni I (Nucleic acids research 1993) 2 3 60
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 60

Products for SNORD18C Gene

Sources for SNORD18C Gene

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