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Aliases for SNORD17 Gene

Subcategory (RNA class) for SNORD17 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD17 Gene

  • Small Nucleolar RNA, C/D Box 17 2 3 5
  • HBI-43 3

External Ids for SNORD17 Gene

ORGUL Members for SNORD17 Gene

Previous GeneCards Identifiers for SNORD17 Gene

  • GC20U900212
  • GC20M017891
  • GC20M017943
  • GC20M017906

Summaries for SNORD17 Gene

GeneCards Summary for SNORD17 Gene

SNORD17 (Small Nucleolar RNA, C/D Box 17) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD17 Gene

Genomics for SNORD17 Gene

Regulatory Elements for SNORD17 Gene

Enhancers for SNORD17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F017992 0.7 ENCODE 17.7 -30.2 -30215 1.4 ELF3 PKNOX1 MLX ARID4B DNMT3B HMG20B CEBPB JUNB TBX21 TGIF2 MGME1 SNORD17 SNX5 RRBP1 PIR51456 PTMAP3
GH20F017954 1.2 FANTOM5 Ensembl ENCODE 15.2 -1.8 -1757 19.8 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MGME1 LOC100286962 SNORD17 LOC100270804 RRBP1 SNX5 GC20M017966
GH20F017991 0.6 ENCODE 11.9 -29.1 -29102 0.4 MTA2 POLR2A ZBED1 IKZF1 CHD1 EBF1 TBX21 SNX5 MGME1 SNORD17 RRBP1 PIR51456
GH20F017996 1 Ensembl ENCODE 11.9 -33.4 -33355 0.6 ELF3 ATF1 ARID4B RAD21 SCRT2 ZNF143 CREM MIXL1 THAP11 KLF11 MGME1 SNX5 SNORD17 RRBP1 OVOL2 ENSG00000229262 PIR51456 PTMAP3
GH20F017927 1.1 Ensembl ENCODE 6.9 +33.9 33880 2.4 HDAC1 PKNOX1 RAD21 YY1 RARA CREM NCOA1 REST NR2F2 MEF2D MGME1 SNORD17 LOC105372549 GC20M017941 GC20M017942
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD17 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD17 Gene

Chromosome:
20
Start:
17,962,710 bp from pter
End:
17,962,946 bp from pter
Size:
237 bases
Orientation:
Minus strand

Genomic View for SNORD17 Gene

Genes around SNORD17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD17 Gene

Proteins for SNORD17 Gene

Post-translational modifications for SNORD17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD17 Gene

Domains & Families for SNORD17 Gene

Gene Families for SNORD17 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD17 Gene

Function for SNORD17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD17 Gene

Localization for SNORD17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD17 Gene

Pathways & Interactions for SNORD17 Gene

SuperPathways for SNORD17 Gene

No Data Available

Interacting Proteins for SNORD17 Gene

Gene Ontology (GO) - Biological Process for SNORD17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD17 Gene

Transcripts for SNORD17 Gene

mRNA/cDNA for SNORD17 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD17 Gene

Small nucleolar RNA, C/D box 17:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD17 Gene

No ASD Table

Relevant External Links for SNORD17 Gene

GeneLoc Exon Structure for
SNORD17
ECgene alternative splicing isoforms for
SNORD17

Expression for SNORD17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD17 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD17 Gene:

SNORD17

SOURCE GeneReport for Unigene cluster for SNORD17 Gene:

Hs.680747
genes like me logo Genes that share expression patterns with SNORD17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD17 Gene

Orthologs for SNORD17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD17 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD17 35
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD17 35
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord17 35
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD17 35 35 35
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD17 35
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD17 35 35
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD17 35
  • 61 (a)
OneToOne
Species where no ortholog for SNORD17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD17 Gene

ENSEMBL:
Gene Tree for SNORD17 (if available)
TreeFam:
Gene Tree for SNORD17 (if available)

Paralogs for SNORD17 Gene

No data available for Paralogs for SNORD17 Gene

Variants for SNORD17 Gene

Sequence variations from dbSNP and Humsavar for SNORD17 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10715106 -- 17,963,912(+) CACTC(-/T)TGAGT intron-variant, upstream-variant-2KB
rs113929298 -- 17,964,691(+) ACTTC(A/C)CTACA intron-variant, upstream-variant-2KB
rs11473033 -- 17,964,330(+) AAAAT(-/TA)TAGTT intron-variant, upstream-variant-2KB
rs11475300 -- 17,962,408(+) CATGT(-/T)GGTCA intron-variant, downstream-variant-500B
rs114846637 -- 17,964,938(+) CAGAA(C/G)CTGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD17 Gene

Variant ID Type Subtype PubMed ID
nsv458944 CNV gain 19166990
nsv470543 CNV gain 18288195

Relevant External Links for SNORD17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD17 Gene

Disorders for SNORD17 Gene

Relevant External Links for SNORD17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD17

No disorders were found for SNORD17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD17 Gene

Publications for SNORD17 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD17 Gene

Sources for SNORD17 Gene

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