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Aliases for SNORD17 Gene

Subcategory (RNA class) for SNORD17 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD17 Gene

  • Small Nucleolar RNA, C/D Box 17 2 3
  • HBI-43 3

External Ids for SNORD17 Gene

ORGUL Members for SNORD17 Gene

Previous GeneCards Identifiers for SNORD17 Gene

  • GC20U900212
  • GC20M017891
  • GC20M017943
  • GC20M017906

Summaries for SNORD17 Gene

GeneCards Summary for SNORD17 Gene

SNORD17 (Small Nucleolar RNA, C/D Box 17) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD17 Gene

Genomics for SNORD17 Gene

Regulatory Elements for SNORD17 Gene

Genomic Location for SNORD17 Gene

Start:
17,962,710 bp from pter
End:
17,962,946 bp from pter
Size:
237 bases
Orientation:
Minus strand

Genomic View for SNORD17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD17 Gene

Proteins for SNORD17 Gene

Post-translational modifications for SNORD17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD17 Gene

Domains for SNORD17 Gene

Gene Families for SNORD17 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD17 Gene

Function for SNORD17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD17 Gene

Localization for SNORD17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD17 Gene

Pathways for SNORD17 Gene

SuperPathways for SNORD17 Gene

No Data Available

Interacting Proteins for SNORD17 Gene

Gene Ontology (GO) - Biological Process for SNORD17 Gene

None

No data available for Pathways by source for SNORD17 Gene

Transcripts for SNORD17 Gene

mRNA/cDNA for SNORD17 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD17 Gene

Small nucleolar RNA, C/D box 17:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD17

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD17 Gene

No ASD Table

Relevant External Links for SNORD17 Gene

GeneLoc Exon Structure for
SNORD17
ECgene alternative splicing isoforms for
SNORD17

Expression for SNORD17 Gene

mRNA expression in normal human tissues for SNORD17 Gene

SOURCE GeneReport for Unigene cluster for SNORD17 Gene Hs.680747

genes like me logo Genes that share expressions with SNORD17: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD17 Gene

Orthologs for SNORD17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD17 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD17 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD17 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord17 16
Snord17 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD17 36
  • 69 (a)
OneToMany
SNORD17 36
  • 69 (a)
OneToMany
SNORD17 36
  • 65 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD17 36
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD17 36
  • 66 (a)
OneToMany
SNORD17 36
  • 65 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD17 36
  • 61 (a)
OneToOne
Species with no ortholog for SNORD17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD17 Gene

ENSEMBL:
Gene Tree for SNORD17 (if available)
TreeFam:
Gene Tree for SNORD17 (if available)

Paralogs for SNORD17 Gene

No data available for Paralogs for SNORD17 Gene

Variants for SNORD17 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD17 Gene

Variant ID Type Subtype PubMed ID
nsv912807 CNV Loss 21882294
nsv458944 CNV Gain 19166990
nsv470543 CNV Gain 18288195
nsv912808 CNV Loss 21882294

Relevant External Links for SNORD17 Gene

HapMap Linkage Disequilibrium report
SNORD17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD17 Gene

Disorders for SNORD17 Gene

No disorders were found for SNORD17 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD17 Gene

Publications for SNORD17 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD17 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD17
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD17
    • Block miRNA regulation of SNORD17 using miScript Target Protectors

    Sources for SNORD17 Gene

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