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Aliases for SNORD16 Gene

Subcategory (RNA class) for SNORD16 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD16 Gene

  • Small Nucleolar RNA, C/D Box 16 2 3 5
  • U16 Small Nucleolar RNA 3
  • U16 SnoRNA 3
  • U16 3

External Ids for SNORD16 Gene

ORGUL Members for SNORD16 Gene

Previous GeneCards Identifiers for SNORD16 Gene

  • GC15M064591
  • GC15M066795
  • GC15M043631
  • GC15M066503
  • GC15M066505
  • GC15M066508
  • GC15M066513
  • GC15M066517

Summaries for SNORD16 Gene

GeneCards Summary for SNORD16 Gene

SNORD16 (Small Nucleolar RNA, C/D Box 16) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD16 Gene

Genomics for SNORD16 Gene

Regulatory Elements for SNORD16 Gene

Enhancers for SNORD16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G066768 1.7 Ensembl ENCODE dbSUPER 29.1 -269.1 -269060 6.2 DMAP1 FEZF1 YY1 ZNF416 ZNF143 ZNF263 SP3 SSRP1 ZNF610 GLIS1 ENSG00000260773 SNORD16 LOC646358 RPL35AP32 IQCH-AS1 RPL4 SNORD18A ZWILCH GC15M066763 ENSG00000274995
GH15G065609 1.2 ENCODE 29.2 +891.5 891498 3.8 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ENSG00000260773 SLC24A1 SNORD16 ENSG00000264937 ENSG00000259635 TIPIN RPL35AP32 ZWILCH HACD3 MTFMT
GH15G066700 1.7 FANTOM5 ENCODE dbSUPER 19.5 -201.4 -201354 8.4 HDGF PKNOX1 AGO1 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B YY1 ZNF766 ENSG00000260773 SNORD16 LOC646358 RPL35AP32 SMAD6 MAP2K1 PIR60751
GH15G067129 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -638.3 -638312 23.0 HDGF PKNOX1 FOXA2 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SMAD3 SNORD16 AAGAB IQCH SKOR1 ENSG00000260773 PIR53240 PIR54457
GH15G065515 1.2 ENCODE 20.4 +986.1 986110 3.6 CREB3L1 AGO1 ZFP64 YBX1 FEZF1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SLC24A1 MTFMT ENSG00000260773 SNORD16 ENSG00000264937 ENSG00000259635 TIPIN RNU6-19P ZWILCH ENSG00000265967
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD16 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000078185 -1990 3001 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D

Genomic Location for SNORD16 Gene

Chromosome:
15
Start:
66,502,811 bp from pter
End:
66,502,910 bp from pter
Size:
100 bases
Orientation:
Minus strand

Genomic View for SNORD16 Gene

Genes around SNORD16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD16 Gene

Proteins for SNORD16 Gene

Post-translational modifications for SNORD16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD16 Gene

Domains & Families for SNORD16 Gene

Gene Families for SNORD16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD16 Gene

Function for SNORD16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD16 Gene

Localization for SNORD16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD16 Gene

Pathways & Interactions for SNORD16 Gene

SuperPathways for SNORD16 Gene

No Data Available

Interacting Proteins for SNORD16 Gene

Gene Ontology (GO) - Biological Process for SNORD16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD16 Gene

Drugs & Compounds for SNORD16 Gene

No Compound Related Data Available

Transcripts for SNORD16 Gene

mRNA/cDNA for SNORD16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD16 Gene

No ASD Table

Relevant External Links for SNORD16 Gene

GeneLoc Exon Structure for
SNORD16
ECgene alternative splicing isoforms for
SNORD16

Expression for SNORD16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD16 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD16 Gene:

SNORD16

SOURCE GeneReport for Unigene cluster for SNORD16 Gene:

Hs.739034
genes like me logo Genes that share expression patterns with SNORD16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD16 Gene

Orthologs for SNORD16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD16 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD16 35
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord16a 35
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD16 35
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD16 35
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD16 35
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD16 35
  • 88 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD16 35
  • 81 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD16 35
  • 80 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea SNORD16 35
  • 68 (a)
OneToOne
Species where no ortholog for SNORD16 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD16 Gene

ENSEMBL:
Gene Tree for SNORD16 (if available)
TreeFam:
Gene Tree for SNORD16 (if available)

Paralogs for SNORD16 Gene

No data available for Paralogs for SNORD16 Gene

Variants for SNORD16 Gene

Sequence variations from dbSNP and Humsavar for SNORD16 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000408247 -- 66,503,846(+) TGTCT(A/C)CCCGG intron-variant, upstream-variant-2KB
rs1004258910 -- 66,503,376(+) GACAG(A/C)ATAGG upstream-variant-2KB, reference, missense
rs1004664838 -- 66,504,212(+) CTATG(C/T)TTTCA intron-variant, upstream-variant-2KB
rs1004758338 -- 66,502,651(+) AGCCA(C/G)GGCAG downstream-variant-500B, upstream-variant-2KB, reference, missense
rs1005037418 -- 66,504,439(+) GCGAA(C/G)AGAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD16 Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Relevant External Links for SNORD16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD16 Gene

Disorders for SNORD16 Gene

Relevant External Links for SNORD16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD16

No disorders were found for SNORD16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD16 Gene

Publications for SNORD16 Gene

  1. A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. (PMID: 8335006) Fragapane P. … Bozzoni I. (EMBO J. 1993) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 3 64
  4. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 3 64

Products for SNORD16 Gene

Sources for SNORD16 Gene

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