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Aliases for SNORD15B Gene

Subcategory (RNA class) for SNORD15B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD15B Gene

  • Small Nucleolar RNA, C/D Box 15B 2 3 5
  • RNA, U15b Small Nucleolar 2 3
  • U15B Small Nucleolar RNA 3
  • U15B SnoRNA 3
  • U15B SnRNA 3
  • RNU15B 3
  • U15B 3

External Ids for SNORD15B Gene

ORGUL Members for SNORD15B Gene

Previous HGNC Symbols for SNORD15B Gene

  • RNU15B

Previous GeneCards Identifiers for SNORD15B Gene

  • GC11P074796
  • GC11P075115
  • GC11P071412

Summaries for SNORD15B Gene

GeneCards Summary for SNORD15B Gene

SNORD15B (Small Nucleolar RNA, C/D Box 15B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD15B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD15B Gene

Genomics for SNORD15B Gene

GeneHancer (GH) Regulatory Elements for SNORD15B Gene

Promoters and enhancers for SNORD15B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I075404 Enhancer 0.4 ENCODE 550.8 +0.2 171 0.2 POLR2A CREB1 GC11P075416 SNORD15B RPS3 GC11M075423
GH11I075405 Enhancer 0.4 ENCODE 550.8 0.0 -39 0.2 POLR2A SCRT2 CREB1 GC11P075416 SNORD15B GC11P075412 PIR55667 RPS3 SNORD15A
GH11I075409 Enhancer 0.4 ENCODE 550.8 +1.3 1337 0.1 POLR2A BCLAF1 GC11P075416 SNORD15B RPS3 GC11M075423
GH11I075327 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 -63.9 -63935 26.4 CLOCK MLX DMAP1 IRF4 YY1 ZNF143 SP3 NFYC GLIS1 RCOR2 ARRB1 POLD3 GDPD5 SNORD15B KLHL35 XRRA1 RNF169 NEU3 RPS3 ENSG00000254974
GH11I075767 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.4 +364.4 364444 1.9 PKNOX1 CLOCK MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 LOC283214 DGAT2 RPS3 EMSY SERPINH1 SNORD15B MOGAT2 RN7SL239P ENSG00000255363 ENSG00000254826
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD15B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD15B gene promoter:

Genomic Locations for SNORD15B Gene

Genomic Locations for SNORD15B Gene
chr11:75,404,421-75,404,566
(GRCh38/hg38)
Size:
146 bases
Orientation:
Plus strand
chr11:75,115,465-75,115,610
(GRCh37/hg19)

Genomic View for SNORD15B Gene

Genes around SNORD15B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD15B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD15B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD15B Gene

Proteins for SNORD15B Gene

Post-translational modifications for SNORD15B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD15B Gene

Domains & Families for SNORD15B Gene

Gene Families for SNORD15B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD15B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD15B Gene

Function for SNORD15B Gene

Phenotypes From GWAS Catalog for SNORD15B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD15B Gene

Localization for SNORD15B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD15B Gene

Pathways & Interactions for SNORD15B Gene

SuperPathways for SNORD15B Gene

No Data Available

Interacting Proteins for SNORD15B Gene

Gene Ontology (GO) - Biological Process for SNORD15B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD15B Gene

Drugs & Compounds for SNORD15B Gene

No Compound Related Data Available

Transcripts for SNORD15B Gene

mRNA/cDNA for SNORD15B Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD15B Gene

No ASD Table

Relevant External Links for SNORD15B Gene

GeneLoc Exon Structure for
SNORD15B
ECgene alternative splicing isoforms for
SNORD15B

Expression for SNORD15B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD15B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD15B Gene:

SNORD15B

SOURCE GeneReport for Unigene cluster for SNORD15B Gene:

Hs.689080
genes like me logo Genes that share expression patterns with SNORD15B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD15B Gene

Orthologs for SNORD15B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD15B Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia SNORD15 34
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNORD15 34
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord15b 34
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD15 34
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD15 34
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD15 34
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD15 34
  • 71 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD15 34 34 34 34
  • 63 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD15 34 34 34 34
  • 70 (a)
ManyToMany
Species where no ortholog for SNORD15B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD15B Gene

ENSEMBL:
Gene Tree for SNORD15B (if available)
TreeFam:
Gene Tree for SNORD15B (if available)

Paralogs for SNORD15B Gene

No data available for Paralogs for SNORD15B Gene

Variants for SNORD15B Gene

Sequence variations from dbSNP and Humsavar for SNORD15B Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000123523 -- 75,402,683(+) G/A upstream_transcript_variant
rs1000433104 -- 75,402,824(+) C/G/T upstream_transcript_variant
rs1000522825 -- 75,402,820(+) G/T upstream_transcript_variant
rs1001087129 -- 75,403,589(+) G/A upstream_transcript_variant
rs1001561088 -- 75,403,909(+) T/A upstream_transcript_variant

Additional Variant Information for SNORD15B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD15B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD15B Gene

Disorders for SNORD15B Gene

Additional Disease Information for SNORD15B

No disorders were found for SNORD15B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD15B Gene

Publications for SNORD15B Gene

  1. Mapping of ribosomal protein S3 and internally nested snoRNA U15A gene to human chromosome 11q13.3-q13.5. (PMID: 7789996) Polakiewicz RD … Page DC (Genomics 1995) 2 3 58
  2. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. (PMID: 8319909) Tycowski KT … Steitz JA (Genes & development 1993) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. Complete genomic structure of human rpS3: identification of functional U15b snoRNA in the fifth intron. (PMID: 11943484) Lim Y … Kim J (Gene 2002) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SNORD15B Gene

Sources for SNORD15B Gene

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