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Aliases for SNORD15A Gene

Subcategory (RNA class) for SNORD15A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD15A Gene

  • Small Nucleolar RNA, C/D Box 15A 2 3
  • RNU15A 3 6
  • RNA, U15a Small Nucleolar 2
  • U15A SnoRNA 3
  • U15A SnRNA 3
  • SnoRNA 3
  • U15A 3

External Ids for SNORD15A Gene

ORGUL Members for SNORD15A Gene

Previous HGNC Symbols for SNORD15A Gene

  • RNU15A

Previous GeneCards Identifiers for SNORD15A Gene

  • GC11P074792
  • GC11P075111
  • GC11P071408

Summaries for SNORD15A Gene

GeneCards Summary for SNORD15A Gene

SNORD15A (Small Nucleolar RNA, C/D Box 15A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD15A Gene

Genomics for SNORD15A Gene

Regulatory Elements for SNORD15A Gene

Genomic Location for SNORD15A Gene

Start:
75,400,391 bp from pter
End:
75,400,538 bp from pter
Size:
148 bases
Orientation:
Plus strand

Genomic View for SNORD15A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD15A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD15A Gene

Proteins for SNORD15A Gene

Post-translational modifications for SNORD15A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD15A Gene

Domains for SNORD15A Gene

Gene Families for SNORD15A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD15A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD15A Gene

Function for SNORD15A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD15A Gene

Localization for SNORD15A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD15A Gene

Pathways for SNORD15A Gene

SuperPathways for SNORD15A Gene

No Data Available

Interacting Proteins for SNORD15A Gene

Gene Ontology (GO) - Biological Process for SNORD15A Gene

None

No data available for Pathways by source for SNORD15A Gene

Transcripts for SNORD15A Gene

mRNA/cDNA for SNORD15A Gene

(2409) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD15A Gene

Small nucleolar RNA, C/D box 15A:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD15A

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD15A Gene

No ASD Table

Relevant External Links for SNORD15A Gene

GeneLoc Exon Structure for
SNORD15A
ECgene alternative splicing isoforms for
SNORD15A

Expression for SNORD15A Gene

mRNA expression in normal human tissues for SNORD15A Gene

SOURCE GeneReport for Unigene cluster for SNORD15A Gene Hs.689081

genes like me logo Genes that share expressions with SNORD15A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD15A Gene

Orthologs for SNORD15A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD15A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD15 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD15 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD15 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord15a 16
Snord15a 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD15 36
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD15 36
  • 61 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD15 36
  • 58 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD15 36
  • 57 (a)
ManyToMany
SNORD15 36
  • 56 (a)
ManyToMany
SNORD15 36
  • 58 (a)
ManyToMany
SNORD15 36
  • 58 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD15 36
  • 58 (a)
ManyToMany
SNORD15 36
  • 58 (a)
ManyToMany
SNORD15 36
  • 58 (a)
ManyToMany
SNORD15 36
  • 60 (a)
ManyToMany
Species with no ortholog for SNORD15A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD15A Gene

ENSEMBL:
Gene Tree for SNORD15A (if available)
TreeFam:
Gene Tree for SNORD15A (if available)

Paralogs for SNORD15A Gene

No data available for Paralogs for SNORD15A Gene

Variants for SNORD15A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD15A Gene

Variant ID Type Subtype PubMed ID
nsv897920 CNV Loss 21882294

Relevant External Links for SNORD15A Gene

HapMap Linkage Disequilibrium report
SNORD15A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD15A Gene

Disorders for SNORD15A Gene

No disorders were found for SNORD15A Gene.

No data available for UniProtKB/Swiss-Prot for SNORD15A Gene

Publications for SNORD15A Gene

  1. Mapping of ribosomal protein S3 and internally nested snoRNA U15A gene to human chromosome 11q13.3-q13.5. (PMID: 7789996) Polakiewicz R.D. … Page D.C. (Genomics 1995) 2 3
  2. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. (PMID: 8319909) Tycowski K.T. … Steitz J.A. (Genes Dev. 1993) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD15A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD15A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD15A
    • Block miRNA regulation of SNORD15A using miScript Target Protectors

    Sources for SNORD15A Gene

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