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Aliases for SNORD15A Gene

Subcategory (RNA class) for SNORD15A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD15A Gene

  • Small Nucleolar RNA, C/D Box 15A 2 3 5
  • RNA, U15a Small Nucleolar 2
  • U15A SnoRNA 3
  • U15A SnRNA 3
  • SnoRNA 3
  • RNU15A 3
  • U15A 3

External Ids for SNORD15A Gene

ORGUL Members for SNORD15A Gene

Previous HGNC Symbols for SNORD15A Gene

  • RNU15A

Previous GeneCards Identifiers for SNORD15A Gene

  • GC11P074792
  • GC11P075111
  • GC11P071408

Summaries for SNORD15A Gene

GeneCards Summary for SNORD15A Gene

SNORD15A (Small Nucleolar RNA, C/D Box 15A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD15A Gene

Genomics for SNORD15A Gene

Regulatory Elements for SNORD15A Gene

Enhancers for SNORD15A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F075405 0.5 ENCODE 0.8 +4.0 3991 0.3 POLR2A SCRT2 GC11P075403 GC11P075405 PIR55667 SNORD15A
GH11F075398 1.1 ENCODE 0.8 +0.9 901 4.8 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 SERPINH1 KLHL35 POLD3 RNF169 RPS3 ENSG00000254460 ENSG00000254630 OR2AT1P LOC283214 ENSG00000254837
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD15A on UCSC Golden Path with GeneCards custom track

Promoters for SNORD15A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000565483 -91 2201 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for SNORD15A Gene

Chromosome:
11
Start:
75,400,391 bp from pter
End:
75,400,538 bp from pter
Size:
148 bases
Orientation:
Plus strand

Genomic View for SNORD15A Gene

Genes around SNORD15A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD15A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD15A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD15A Gene

Proteins for SNORD15A Gene

Post-translational modifications for SNORD15A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD15A Gene

Domains & Families for SNORD15A Gene

Gene Families for SNORD15A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD15A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD15A Gene

Function for SNORD15A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD15A Gene

Localization for SNORD15A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD15A Gene

Pathways & Interactions for SNORD15A Gene

SuperPathways for SNORD15A Gene

No Data Available

Interacting Proteins for SNORD15A Gene

Gene Ontology (GO) - Biological Process for SNORD15A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD15A Gene

Transcripts for SNORD15A Gene

mRNA/cDNA for SNORD15A Gene

(2) Additional mRNA sequences :
(2409) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD15A Gene

Small nucleolar RNA, C/D box 15A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD15A Gene

No ASD Table

Relevant External Links for SNORD15A Gene

GeneLoc Exon Structure for
SNORD15A
ECgene alternative splicing isoforms for
SNORD15A

Expression for SNORD15A Gene

mRNA expression in normal human tissues for SNORD15A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD15A Gene:

SNORD15A

SOURCE GeneReport for Unigene cluster for SNORD15A Gene:

Hs.689081
genes like me logo Genes that share expression patterns with SNORD15A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD15A Gene

Orthologs for SNORD15A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD15A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD15 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD15 35
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD15 35
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord15a 35
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD15 35
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD15 35
  • 61 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD15 35
  • 58 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD15 35 35 35 35
  • 57 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD15 35 35 35 35
  • 58 (a)
ManyToMany
Species where no ortholog for SNORD15A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD15A Gene

ENSEMBL:
Gene Tree for SNORD15A (if available)
TreeFam:
Gene Tree for SNORD15A (if available)

Paralogs for SNORD15A Gene

No data available for Paralogs for SNORD15A Gene

Variants for SNORD15A Gene

Sequence variations from dbSNP and Humsavar for SNORD15A Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs111428205 -- 75,400,691(+) TGGAT(A/T)AGTTT intron-variant, downstream-variant-500B
rs111486717 -- 75,399,580(+) AAGGT(G/T)AGCCT intron-variant, upstream-variant-2KB
rs111542537 -- 75,399,404(+) CCTGG(A/G)CGCCT upstream-variant-2KB
rs111591514 -- 75,401,023(+) GACTA(C/T)AGGCG intron-variant, downstream-variant-500B
rs111807450 -- 75,399,487(+) TCGCG(-/C)CCTTT upstream-variant-2KB

Relevant External Links for SNORD15A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD15A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD15A Gene

Disorders for SNORD15A Gene

Relevant External Links for SNORD15A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD15A

No disorders were found for SNORD15A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD15A Gene

Publications for SNORD15A Gene

  1. Mapping of ribosomal protein S3 and internally nested snoRNA U15A gene to human chromosome 11q13.3-q13.5. (PMID: 7789996) Polakiewicz R.D. … Page D.C. (Genomics 1995) 2 3 64
  2. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. (PMID: 8319909) Tycowski K.T. … Steitz J.A. (Genes Dev. 1993) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD15A Gene

Sources for SNORD15A Gene

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