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Aliases for SNORD14B Gene

Subcategory (RNA class) for SNORD14B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD14B Gene

  • Small Nucleolar RNA, C/D Box 14B 2 3 5
  • RNA, U14B Small Nucleolar 2 3
  • SnoRNA 3
  • RNU14B 3
  • U14B 3
  • U14 3

External Ids for SNORD14B Gene

ORGUL Members for SNORD14B Gene

Previous HGNC Symbols for SNORD14B Gene

  • RNU14B

Previous GeneCards Identifiers for SNORD14B Gene

  • GC11M017065
  • GC11M016781
  • GC11M017097
  • GC11M017082
  • GC11M017088
  • GC11M017101
  • GC11M017105
  • GC11M017109
  • GC11M017113
  • GC11M017118

Summaries for SNORD14B Gene

GeneCards Summary for SNORD14B Gene

SNORD14B (Small Nucleolar RNA, C/D Box 14B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD14B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD14B Gene

Genomics for SNORD14B Gene

GeneHancer (GH) Regulatory Elements for SNORD14B Gene

Promoters and enhancers for SNORD14B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I017075 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 581.9 -1.6 -1563 3.6 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 RPS13 SNORD14B GC11M017076 GC11M017077 GC11M017078 GC11M017079 SNORD14A OR7E14P RPL36AP37 GC11M016970
GH11I018010 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 23.6 -936.7 -936671 3.5 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF143 ZNF548 SERGEF SAAL1 SNORD14A GTF2H1 SNORD14B SPTY2D1 ENSG00000256361 LOC100129966 TSG101 ENSG00000255448
GH11I016737 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.3 +336.8 336827 3 HDGF FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B SOX6 C11orf58 SNORD14A SNORD14B PIR48413
GH11I016602 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.8 +470.2 470167 5.6 PKNOX1 SMAD1 ARNT ARID4B SIN3A YY1 POLR2B E2F8 ZNF143 DEK SNORD14A SNORD14B RPS13 SOX6 LOC105376571 RN7SL188P
GH11I017273 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.8 -201.0 -201018 6.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 NUCB2 OR7E14P SAAL1 SNORD14A SNORD14B GC11M017256 GC11P017338
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD14B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD14B gene promoter:

Genomic Locations for SNORD14B Gene

Genomic Locations for SNORD14B Gene
chr11:17,075,778-17,075,868
(GRCh38/hg38)
Size:
91 bases
Orientation:
Minus strand
chr11:17,097,325-17,097,415
(GRCh37/hg19)

Genomic View for SNORD14B Gene

Genes around SNORD14B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD14B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD14B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD14B Gene

Proteins for SNORD14B Gene

Post-translational modifications for SNORD14B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD14B Gene

Domains & Families for SNORD14B Gene

Gene Families for SNORD14B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD14B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD14B Gene

Function for SNORD14B Gene

Phenotypes From GWAS Catalog for SNORD14B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD14B Gene

Localization for SNORD14B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD14B Gene

Pathways & Interactions for SNORD14B Gene

SuperPathways for SNORD14B Gene

No Data Available

Interacting Proteins for SNORD14B Gene

Gene Ontology (GO) - Biological Process for SNORD14B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD14B Gene

Drugs & Compounds for SNORD14B Gene

No Compound Related Data Available

Transcripts for SNORD14B Gene

mRNA/cDNA for SNORD14B Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD14B Gene

No ASD Table

Relevant External Links for SNORD14B Gene

GeneLoc Exon Structure for
SNORD14B
ECgene alternative splicing isoforms for
SNORD14B

Expression for SNORD14B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD14B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD14B Gene:

SNORD14B
genes like me logo Genes that share expression patterns with SNORD14B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD14B Gene

Orthologs for SNORD14B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD14B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD14 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD14 34
  • 96 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snord14a 34
  • 89 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD14 34
  • 87 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORD14 34
  • 63 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD14 34
  • 83 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD14 34
  • 43 (a)
OneToMany
Species where no ortholog for SNORD14B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD14B Gene

ENSEMBL:
Gene Tree for SNORD14B (if available)
TreeFam:
Gene Tree for SNORD14B (if available)

Paralogs for SNORD14B Gene

No data available for Paralogs for SNORD14B Gene

Variants for SNORD14B Gene

Sequence variations from dbSNP and Humsavar for SNORD14B Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000196432 -- 17,076,445(-) A/G upstream_transcript_variant
rs1000251438 -- 17,076,726(-) G/A/C upstream_transcript_variant
rs1005833101 -- 17,076,007(-) T/C upstream_transcript_variant
rs1006388472 -- 17,077,509(-) G/A upstream_transcript_variant
rs1007260235 -- 17,076,852(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD14B Gene

Variant ID Type Subtype PubMed ID
nsv467711 CNV gain 19166990
nsv553567 CNV gain 21841781
nsv553568 CNV gain 21841781

Additional Variant Information for SNORD14B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD14B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD14B Gene

Disorders for SNORD14B Gene

Additional Disease Information for SNORD14B

No disorders were found for SNORD14B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD14B Gene

Publications for SNORD14B Gene

  1. U14 snoRNAs are encoded in introns of human ribosomal protein S13 gene. (PMID: 8920921) Kenmochi N … Tanaka T (Biochemical and biophysical research communications 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. U24, a novel intron-encoded small nucleolar RNA with two 12 nt long, phylogenetically conserved complementarities to 28S rRNA. (PMID: 7651828) Qu LH … Bachellerie JP (Nucleic acids research 1995) 22 58

Products for SNORD14B Gene

Sources for SNORD14B Gene

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