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Aliases for SNORD14A Gene

Subcategory (RNA class) for SNORD14A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD14A Gene

  • Small Nucleolar RNA, C/D Box 14A 2 3 5
  • RNA, U14 Small Nucleolar 2 3
  • U14 Small Nucleolar RNA 3
  • U14 SnoRNA 3
  • U14-S13-5 3
  • RNU14A 3
  • RNU14 3
  • U14 3

External Ids for SNORD14A Gene

ORGUL Members for SNORD14A Gene

Previous HGNC Symbols for SNORD14A Gene

  • RNU14

Previous GeneCards Identifiers for SNORD14A Gene

  • GC11M017063
  • GC11M017096
  • GC11M017081
  • GC11M017087
  • GC11M017100
  • GC11M017104

Summaries for SNORD14A Gene

GeneCards Summary for SNORD14A Gene

SNORD14A (Small Nucleolar RNA, C/D Box 14A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD14A Gene

Genomics for SNORD14A Gene

Regulatory Elements for SNORD14A Gene

Enhancers for SNORD14A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F017267 1 Ensembl ENCODE 14.2 -193.1 -193057 0.4 ZNF639 PKNOX1 JUN CEBPB MAX SIN3A MNT RAD21 GTF3C2 JUND OR7E14P SAAL1 SNORD14A SNORD14B RPL34P24 NCR3LG1 GC11M017256 LOC105376575
GH11F017075 1.1 ENCODE 12.8 -2.7 -2687 3.6 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 RPL36AP37 RPS13 C11orf58 OR7E14P SNORD14A PIK3C2A SNORD14B GC11M017076 GC11M017077 GC11M017078
GH11F018011 1 ENCODE 13.6 -937.8 -937796 3.5 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 GLIS2 SERGEF SAAL1 SNORD14B SNORD14A GTF2H1 ENSG00000256361 GC11P017952
GH11F016737 1.1 ENCODE 12.1 +335.7 335704 3.0 HDGF CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PIK3C2A RPL36AP37 C11orf58 SNORD14A SNORD14B RPS13 SOX6 MIR6073 PIR48413
GH11F017206 1.4 FANTOM5 ENCODE 8.4 -133.9 -133895 4.5 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 CBX5 SP3 NFYC OR7E14P RPS13 SNORD14B SNORD14A RPS2P40 GC11P017211 NUCB2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD14A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD14A Gene

Chromosome:
11
Start:
17,074,653 bp from pter
End:
17,074,744 bp from pter
Size:
92 bases
Orientation:
Minus strand

Genomic View for SNORD14A Gene

Genes around SNORD14A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD14A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD14A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD14A Gene

Proteins for SNORD14A Gene

Post-translational modifications for SNORD14A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD14A Gene

Domains & Families for SNORD14A Gene

Gene Families for SNORD14A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD14A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD14A Gene

Function for SNORD14A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD14A Gene

Localization for SNORD14A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD14A Gene

Pathways & Interactions for SNORD14A Gene

SuperPathways for SNORD14A Gene

No Data Available

Interacting Proteins for SNORD14A Gene

Gene Ontology (GO) - Biological Process for SNORD14A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD14A Gene

Transcripts for SNORD14A Gene

mRNA/cDNA for SNORD14A Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD14A Gene

No ASD Table

Relevant External Links for SNORD14A Gene

GeneLoc Exon Structure for
SNORD14A
ECgene alternative splicing isoforms for
SNORD14A

Expression for SNORD14A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD14A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD14A Gene:

SNORD14A
genes like me logo Genes that share expression patterns with SNORD14A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD14A Gene

Orthologs for SNORD14A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD14A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD14 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD14 35
  • 80 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD14 35
  • 66 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD14 35
  • 66 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD14 35
  • 78 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea SNORD14 35
  • 43 (a)
OneToMany
Species where no ortholog for SNORD14A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD14A Gene

ENSEMBL:
Gene Tree for SNORD14A (if available)
TreeFam:
Gene Tree for SNORD14A (if available)

Paralogs for SNORD14A Gene

No data available for Paralogs for SNORD14A Gene

Variants for SNORD14A Gene

Sequence variations from dbSNP and Humsavar for SNORD14A Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1059640 -- 17,075,168(-) ATTCT(A/G)ATAGA upstream-variant-2KB, reference, synonymous-codon
rs10832731 -- 17,076,148(+) TTTGG(G/T)AGGCC intron-variant, upstream-variant-2KB
rs11024148 -- 17,074,512(+) ATACT(A/G)GTCCC intron-variant, downstream-variant-500B
rs11024149 -- 17,076,319(+) CAGGA(A/G)GCGGA intron-variant, upstream-variant-2KB
rs11050 -- 17,075,484(-) GTTGC(C/T)GTTCG downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNORD14A Gene

Variant ID Type Subtype PubMed ID
nsv467711 CNV gain 19166990
nsv553567 CNV gain 21841781
nsv553568 CNV gain 21841781

Relevant External Links for SNORD14A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD14A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD14A Gene

Disorders for SNORD14A Gene

No disorders were found for SNORD14A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD14A Gene

Publications for SNORD14A Gene

  1. U14 snoRNAs are encoded in introns of human ribosomal protein S13 gene. (PMID: 8920921) Kenmochi N. … Tanaka T. (Biochem. Biophys. Res. Commun. 1996) 2 3 22 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. Unique features of Chinese hamster S13 gene relative to its human and Xenopus analogs. (PMID: 10390155) Chen M.S. … Laszlo A. (DNA Cell Biol. 1999) 22 64
  4. Localization and processing from a polycistronic precursor of novel snoRNAs in maize. (PMID: 9664033) Shaw P.J. … Brown J.W. (J. Cell. Sci. 1998) 22 64
  5. Delocalization of some small nucleolar RNPs after actinomycin D treatment to deplete early pre-rRNAs. (PMID: 9211978) Rivera-LeA^n R. … Gerbi S.A. (Chromosoma 1997) 22 64

Products for SNORD14A Gene

Sources for SNORD14A Gene

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