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Aliases for SNORD13P1 Gene

Subcategory (RNA class) for SNORD13P1 Gene

snoRNA

Aliases for SNORD13P1 Gene

  • Small Nucleolar RNA, C/D Box 13 Pseudogene 1 2 3 5
  • RNA, U13 Small Nuclear Pseudogene 1 2 3
  • U13.32A 3
  • RNU13P1 3
  • U13 3

External Ids for SNORD13P1 Gene

ORGUL Members for SNORD13P1 Gene

Previous HGNC Symbols for SNORD13P1 Gene

  • RNU13P1

Previous GeneCards Identifiers for SNORD13P1 Gene

  • GC22M042474
  • GC22U900917

Summaries for SNORD13P1 Gene

GeneCards Summary for SNORD13P1 Gene

SNORD13P1 (Small Nucleolar RNA, C/D Box 13 Pseudogene 1) is a Pseudogene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD13P1 Gene

Genomics for SNORD13P1 Gene

Regulatory Elements for SNORD13P1 Gene

Enhancers for SNORD13P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G042077 1.2 ENCODE 0.7 -3.1 -3101 3.9 HDGF PKNOX1 CREB3L1 AGO1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SMDT1 EP300 CYP2D6 RPL5P34 PHF5A XRCC6 RN7SKP80 LOC100506679 TOB2 RRP7BP
GH22G042073 0.6 ENCODE 0.7 +1.5 1490 2.4 CTCF NR2F1 GATAD2B ZFHX2 ZNF274 POLR2A ZNF366 EGR2 SMDT1 CYP2D6 FAM109B NAGA NDUFA6-AS1 SNORD13P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD13P1 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD13P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000146709 1561 801 CTCF POLR2A NR2F1 GATAD2B

Genomic Location for SNORD13P1 Gene

Chromosome:
22
Start:
42,076,058 bp from pter
End:
42,076,161 bp from pter
Size:
104 bases
Orientation:
Minus strand

Genomic View for SNORD13P1 Gene

Genes around SNORD13P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD13P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD13P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD13P1 Gene

Proteins for SNORD13P1 Gene

Post-translational modifications for SNORD13P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD13P1 Gene

Domains & Families for SNORD13P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD13P1 Gene

Function for SNORD13P1 Gene

Phenotypes for SNORD13P1 Gene

GenomeRNAi human phenotypes for SNORD13P1:
genes like me logo Genes that share phenotypes with SNORD13P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD13P1 Gene

Localization for SNORD13P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD13P1 Gene

Pathways & Interactions for SNORD13P1 Gene

SuperPathways for SNORD13P1 Gene

No Data Available

Interacting Proteins for SNORD13P1 Gene

Gene Ontology (GO) - Biological Process for SNORD13P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD13P1 Gene

Drugs & Compounds for SNORD13P1 Gene

No Compound Related Data Available

Transcripts for SNORD13P1 Gene

mRNA/cDNA for SNORD13P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD13P1 Gene

No ASD Table

Relevant External Links for SNORD13P1 Gene

GeneLoc Exon Structure for
SNORD13P1
ECgene alternative splicing isoforms for
SNORD13P1

Expression for SNORD13P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD13P1 Gene:

SNORD13P1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD13P1 Gene

Orthologs for SNORD13P1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD13P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU13 35
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoU13 35
  • 83 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia snoU13 35
  • 79 (a)
ManyToMany
Species where no ortholog for SNORD13P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD13P1 Gene

ENSEMBL:
Gene Tree for SNORD13P1 (if available)
TreeFam:
Gene Tree for SNORD13P1 (if available)

Paralogs for SNORD13P1 Gene

No data available for Paralogs for SNORD13P1 Gene

Variants for SNORD13P1 Gene

Relevant External Links for SNORD13P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD13P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD13P1 Gene

Disorders for SNORD13P1 Gene

No disorders were found for SNORD13P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD13P1 Gene

Publications for SNORD13P1 Gene

  1. Three pseudogenes for human U13 snRNA belong to class III. (PMID: 1748306) Baserga S.J. … Steitz J.A. (Gene 1991) 2 3 64
  2. PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli. (PMID: 15574332) Boulon S. … Bertrand E. (Mol. Cell 2004) 3 64

Products for SNORD13P1 Gene

Sources for SNORD13P1 Gene

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