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Aliases for SNORD13E Gene

Subcategory (RNA class) for SNORD13E Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD13E Gene

  • Small Nucleolar RNA, C/D Box 13E 2 3 5

External Ids for SNORD13E Gene

Previous GeneCards Identifiers for SNORD13E Gene

  • GC00U936699
  • GC15U902392

Summaries for SNORD13E Gene

GeneCards Summary for SNORD13E Gene

SNORD13E (Small Nucleolar RNA, C/D Box 13E) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORD13E Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD13E Gene

Genomics for SNORD13E Gene

Regulatory Elements for SNORD13E Gene

Enhancers for SNORD13E Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H065817 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11 -123.2 -123197 4.7 HDGF PKNOX1 ARNT TCF12 GATA2 ELK1 ATF7 RUNX3 NCOA1 JUNB DENND4A ZWILCH INTS14 PDCD7 SLC24A1 ENSG00000260773 TIPIN MTFMT RAB11A SNORD13E
GH15H065823 1.4 Ensembl ENCODE dbSUPER 10.1 -127.3 -127280 1 HDGF GLI4 ZNF2 RAD21 CHAMP1 RFX5 ZNF143 ATF7 RUNX3 IKZF2 PDCD7 DENND4A RAB11A ENSG00000260773 SNORD13E HNRNPA1P44 ENSG00000283249
GH15H065638 1.1 Ensembl ENCODE 10.4 +58.0 58040 0.6 HDAC1 ELF3 HDGF PKNOX1 RB1 ARNT NFXL1 ZNF2 RAD21 ZNF366 INTS14 PARP16 RPL35AP32 SNORD16 DENND4A SLC24A1 RPL4 SNORD13E ENSG00000260773 DIS3L
GH15H065824 0.9 ENCODE dbSUPER 10.1 -128.4 -128368 1 CTCF TFAP4 HLF CEBPB CEBPG RAD21 CEBPA PRDM10 WT1 DENND4A RAB11A SNORD13E IGDCC4 HNRNPA1P44 ENSG00000283249
GH15H065722 0.4 ENCODE 11.5 -27.5 -27538 3.2 CEBPB CEBPG SNORD13E DENND4A HACD3 RAB11A MIR4511
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD13E on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD13E Gene

Genomic Locations for SNORD13E Gene
chr15:65,696,833-65,696,936
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand
chr15:65,989,171-65,989,274
(GRCh37/hg19)

Genomic View for SNORD13E Gene

Genes around SNORD13E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD13E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD13E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORD13E Gene

Proteins for SNORD13E Gene

Post-translational modifications for SNORD13E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD13E Gene

Domains & Families for SNORD13E Gene

Gene Families for SNORD13E Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD13E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD13E Gene

Function for SNORD13E Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD13E Gene

Localization for SNORD13E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD13E Gene

Pathways & Interactions for SNORD13E Gene

SuperPathways for SNORD13E Gene

No Data Available

Interacting Proteins for SNORD13E Gene

Gene Ontology (GO) - Biological Process for SNORD13E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD13E Gene

Drugs & Compounds for SNORD13E Gene

No Compound Related Data Available

Transcripts for SNORD13E Gene

mRNA/cDNA for SNORD13E Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD13E Gene

No ASD Table

Relevant External Links for SNORD13E Gene

GeneLoc Exon Structure for
SNORD13E
ECgene alternative splicing isoforms for
SNORD13E

Expression for SNORD13E Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD13E Gene

Orthologs for SNORD13E Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD13E Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU13 34
  • 98 (a)
OneToOne
Species where no ortholog for SNORD13E was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD13E Gene

ENSEMBL:
Gene Tree for SNORD13E (if available)
TreeFam:
Gene Tree for SNORD13E (if available)

Paralogs for SNORD13E Gene

No data available for Paralogs for SNORD13E Gene

Variants for SNORD13E Gene

Relevant External Links for SNORD13E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD13E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD13E Gene

Disorders for SNORD13E Gene

Relevant External Links for SNORD13E

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD13E

No disorders were found for SNORD13E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD13E Gene

Publications for SNORD13E Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORD13E Gene

Sources for SNORD13E Gene

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