Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD139 Gene

Subcategory (RNA class) for SNORD139 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD139 Gene

  • Small Nucleolar RNA, C/D Box 139 2 3
  • RNA, U86 Small Nucleolar 3
  • U82 Small Nucleolar RNA 3
  • U82 SnoRNA 3
  • U86 SnoRNA 3
  • RNU86 3
  • U82 3
  • U86 3

External Ids for SNORD139 Gene

ORGUL Members for SNORD139 Gene

Previous GeneCards Identifiers for SNORD139 Gene

  • GC00U936319
  • GC22M039853
  • GC22M039956
  • GC22M040648
  • GC22M041096

Summaries for SNORD139 Gene

Entrez Gene Summary for SNORD139 Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like U86, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like U86, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD139 Gene

SNORD139 (Small Nucleolar RNA, C/D Box 139) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD139 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD139 Gene

Genomics for SNORD139 Gene

Regulatory Elements for SNORD139 Gene

Enhancers for SNORD139 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H039315 1.2 ENCODE 0.7 -1.1 -1101 5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 DDX17 RPL3 SNORD83B TNRC6B ENSG00000228274 SYNGR1 TAB1 SNORD83A ENSG00000273076 ENSG00000230149
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD139 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD139 Gene

Chromosome:
22
Start:
39,316,842 bp from pter
End:
39,316,896 bp from pter
Size:
55 bases
Orientation:
Minus strand

Genomic View for SNORD139 Gene

Genes around SNORD139 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD139 Gene

Proteins for SNORD139 Gene

Post-translational modifications for SNORD139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD139 Gene

Domains & Families for SNORD139 Gene

Gene Families for SNORD139 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD139: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD139 Gene

Function for SNORD139 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD139 Gene

Localization for SNORD139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD139 Gene

Pathways & Interactions for SNORD139 Gene

SuperPathways for SNORD139 Gene

No Data Available

Interacting Proteins for SNORD139 Gene

Gene Ontology (GO) - Biological Process for SNORD139 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD139 Gene

Drugs & Compounds for SNORD139 Gene

No Compound Related Data Available

Transcripts for SNORD139 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD139 Gene

No ASD Table

Relevant External Links for SNORD139 Gene

GeneLoc Exon Structure for
SNORD139
ECgene alternative splicing isoforms for
SNORD139

Expression for SNORD139 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD139 Gene:

SNORD139
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD139 Gene

Orthologs for SNORD139 Gene

No data available for Orthologs and Evolution for SNORD139 Gene

Paralogs for SNORD139 Gene

No data available for Paralogs for SNORD139 Gene

Variants for SNORD139 Gene

Sequence variations from dbSNP and Humsavar for SNORD139 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000428722 -- 39,316,470(+) TTCCA(A/G)GAGAG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000606715 -- 39,318,835(+) CCATT(C/T)TTTTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000826106 -- 39,317,388(+) AGAAA(C/G)CATGC intron-variant, upstream-variant-2KB
rs1000933539 -- 39,317,147(+) CCCAG(A/G)GCCAG intron-variant, upstream-variant-2KB
rs1002052109 -- 39,316,707(+) TCACC(C/T)GGGTG intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SNORD139 Gene

Variant ID Type Subtype PubMed ID
nsv589033 CNV loss 21841781
nsv834198 CNV loss 17160897

Relevant External Links for SNORD139 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD139

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD139 Gene

Disorders for SNORD139 Gene

Relevant External Links for SNORD139

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD139
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD139

No disorders were found for SNORD139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD139 Gene

Publications for SNORD139 Gene

  1. snoStrip: a snoRNA annotation pipeline. (PMID: 24174566) Bartschat S … Hertel J (Bioinformatics (Oxford, England) 2014) 2 3 60
  2. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 3 60

Products for SNORD139 Gene

Sources for SNORD139 Gene

Content
Loading form....