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Aliases for SNORD139 Gene

Subcategory (RNA class) for SNORD139 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD139 Gene

  • Small Nucleolar RNA, C/D Box 139 2 3
  • RNA, U86 Small Nucleolar 3
  • U82 Small Nucleolar RNA 3
  • U82 SnoRNA 3
  • U86 SnoRNA 3
  • RNU86 3
  • U82 3
  • U86 3

External Ids for SNORD139 Gene

ORGUL Members for SNORD139 Gene

Previous GeneCards Identifiers for SNORD139 Gene

  • GC00U936319

Summaries for SNORD139 Gene

Entrez Gene Summary for SNORD139 Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like U86, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like U86, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD139 Gene

SNORD139 (Small Nucleolar RNA, C/D Box 139) is an RNA Gene, and is affiliated with the snoRNA class. Among its related pathways are Viral mRNA Translation.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD139 Gene

Genomics for SNORD139 Gene

Regulatory Elements for SNORD139 Gene

Enhancers for SNORD139 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNORD139 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD139 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNORD139 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD139 Gene

Chromosome:
22
Start:
39,316,842 bp from pter
End:
39,316,896 bp from pter
Size:
55 bases
Orientation:
Minus strand

Genomic View for SNORD139 Gene

Genes around SNORD139 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD139 Gene

Proteins for SNORD139 Gene

Post-translational modifications for SNORD139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD139 Gene

Domains & Families for SNORD139 Gene

Gene Families for SNORD139 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD139: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD139 Gene

Function for SNORD139 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD139 Gene

Localization for SNORD139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD139 Gene

Pathways & Interactions for SNORD139 Gene

SuperPathways for SNORD139 Gene

Superpath Contained pathways
1 Viral mRNA Translation
genes like me logo Genes that share pathways with SNORD139: view

Pathways by source for SNORD139 Gene

1 BioSystems pathway for SNORD139 Gene

Interacting Proteins for SNORD139 Gene

Gene Ontology (GO) - Biological Process for SNORD139 Gene

None

No data available for SIGNOR curated interactions for SNORD139 Gene

Drugs & Compounds for SNORD139 Gene

No Compound Related Data Available

Expression for SNORD139 Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD139 Gene

Orthologs for SNORD139 Gene

No data available for Orthologs and Evolution for SNORD139 Gene

Paralogs for SNORD139 Gene

No data available for Paralogs for SNORD139 Gene

Variants for SNORD139 Gene

Relevant External Links for SNORD139 Gene

HapMap Linkage Disequilibrium report
SNORD139

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD139 Gene

Disorders for SNORD139 Gene

No disorders were found for SNORD139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD139 Gene

Publications for SNORD139 Gene

  1. snoStrip: a snoRNA annotation pipeline. (PMID: 24174566) Bartschat S. … Hertel J. (Bioinformatics 2014) 2 3 67
  2. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S. … Simonic T. (Biochim. Biophys. Acta 2000) 3

Products for SNORD139 Gene

Sources for SNORD139 Gene

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