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Aliases for SNORD13 Gene

Subcategory (RNA class) for SNORD13 Gene


Quality Score for this RNA gene is


Aliases for SNORD13 Gene

  • Small Nucleolar RNA, C/D Box 13 2 3 5
  • SNORD13A 3
  • RNU13 3
  • U13 3

External Ids for SNORD13 Gene

ORGUL Members for SNORD13 Gene

Previous GeneCards Identifiers for SNORD13 Gene

  • GC08P033370

Summaries for SNORD13 Gene

GeneCards Summary for SNORD13 Gene

SNORD13 (Small Nucleolar RNA, C/D Box 13) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD13 include Brain Stem Cancer and Brain Stem Glioma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD13 Gene

Genomics for SNORD13 Gene

Regulatory Elements for SNORD13 Gene

Enhancers for SNORD13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F033574 0.7 FANTOM5 Ensembl 12 +61.3 61309 0.8 TBP POLR2A CREB3L1 NFYB NR4A1 SUPT5H MGA FUT10 LOC100630919 SNORD13 TTI2 ENSG00000252505 RPL10P18 MAK16 RNF122 RN7SL621P
GH08F033580 0.2 ENCODE 12 +68.0 68043 1.6 ELF3 TBP ATF1 ARID4B DMAP1 ZNF48 ZSCAN9 CREM MIXL1 THAP11 FUT10 LOC100630919 SNORD13 TTI2 RPL10P18 ENSG00000252505 MAK16 RNF122 GC08P033581 DUSP26
GH08F033536 1 Ensembl ENCODE 11.9 +23.2 23226 1.4 SOX13 JUND FOS NR2F2 RNF122 SNORD13 TTI2 FUT10 GC08P033547 LOC100630919
GH08F033470 0.2 ENCODE 11.7 -41.2 -41172 3.2 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF207 TTI2 FUT10 ENSG00000272338 SNORD13 LOC100630919 ENSG00000252505 RPL10P18 RNF122 LOC100507379
GH08F033553 0.7 Ensembl ENCODE 11.6 +43.5 43454 7.5 HDGF ELF3 PKNOX1 TBL1XR1 RARA EGR1 CBX5 ZNF143 ETV6 CREM FUT10 LOC100630919 SNORD13 TTI2 RNF122 GC08P033546 RPL10P18
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD13 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD13 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001389585 -75 3601 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF548 SP3 NFYC TBX21

Genomic Location for SNORD13 Gene

33,513,475 bp from pter
33,513,578 bp from pter
104 bases
Plus strand

Genomic View for SNORD13 Gene

Genes around SNORD13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD13 Gene

Proteins for SNORD13 Gene

Post-translational modifications for SNORD13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD13 Gene

Domains & Families for SNORD13 Gene

Gene Families for SNORD13 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD13 Gene

Function for SNORD13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD13 Gene

Localization for SNORD13 Gene

Subcellular locations from

Jensen Localization Image for SNORD13 Gene COMPARTMENTS Subcellular localization image for SNORD13 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORD13 Gene

Pathways & Interactions for SNORD13 Gene

SuperPathways for SNORD13 Gene

No Data Available

Interacting Proteins for SNORD13 Gene

Gene Ontology (GO) - Biological Process for SNORD13 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD13 Gene

Transcripts for SNORD13 Gene

mRNA/cDNA for SNORD13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD13 Gene

No ASD Table

Relevant External Links for SNORD13 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD13 Gene

mRNA expression in normal human tissues for SNORD13 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD13 Gene:

genes like me logo Genes that share expression patterns with SNORD13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD13 Gene

Orthologs for SNORD13 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD13 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoU13 35 35
  • 98 (a)
Species where no ortholog for SNORD13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD13 Gene

Gene Tree for SNORD13 (if available)
Gene Tree for SNORD13 (if available)

Paralogs for SNORD13 Gene

No data available for Paralogs for SNORD13 Gene

Variants for SNORD13 Gene

Sequence variations from dbSNP and Humsavar for SNORD13 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs111343960 -- 33,513,843(+) TTTTC(C/G)AGAGA downstream-variant-500B, upstream-variant-2KB
rs111374896 -- 33,511,489(+) TGTCA(C/T)TTATA intron-variant, upstream-variant-2KB
rs114826274 -- 33,513,473(+) TAAGA(A/C/T)GATCC upstream-variant-2KB, utr-variant-5-prime
rs115441360 -- 33,513,073(+) CCACC(C/G)CCAGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs11785250 -- 33,513,535(+) GTGCC(A/G)CCCTT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SNORD13 Gene

Variant ID Type Subtype PubMed ID
nsv6146 CNV deletion 18451855

Relevant External Links for SNORD13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD13 Gene

Disorders for SNORD13 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SNORD13 Gene - From: DISEASES

Disorder Aliases PubMed IDs
brain stem cancer
  • malignant neoplasm of brain stem
brain stem glioma
  • brainstem neuroglial tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SNORD13: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD13 Gene

Publications for SNORD13 Gene

  1. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. Processing of mammalian rRNA precursors at the 3' end of 18S rRNA. Identification of cis-acting signals suggests the involvement of U13 small nucleolar RNA. (PMID: 8973634) CavaillAc J. … Bachellerie J.P. (Eur. J. Biochem. 1996) 3 64
  4. Novel intron-encoded small nucleolar RNAs with long sequence complementarities to mature rRNAs involved in ribosome biogenesis. (PMID: 8721999) Bachellerie J.P. … Renalier M.H. (Biochem. Cell Biol. 1995) 3 64
  5. The numerous modified nucleotides in eukaryotic ribosomal RNA. (PMID: 2247610) Maden B.E. (Prog. Nucleic Acid Res. Mol. Biol. 1990) 3 64

Products for SNORD13 Gene

Sources for SNORD13 Gene

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