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Aliases for SNORD13 Gene

Subcategory (RNA class) for SNORD13 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD13 Gene

  • Small Nucleolar RNA, C/D Box 13 2 3
  • RNU13 3
  • U13 3

External Ids for SNORD13 Gene

ORGUL Members for SNORD13 Gene

Previous GeneCards Identifiers for SNORD13 Gene

  • GC08P033370

Summaries for SNORD13 Gene

GeneCards Summary for SNORD13 Gene

SNORD13 (Small Nucleolar RNA, C/D Box 13) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD13 Gene

Genomics for SNORD13 Gene

Regulatory Elements for SNORD13 Gene

Genomic Location for SNORD13 Gene

Start:
33,513,475 bp from pter
End:
33,513,578 bp from pter
Size:
104 bases
Orientation:
Plus strand

Genomic View for SNORD13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD13 Gene

Proteins for SNORD13 Gene

Post-translational modifications for SNORD13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD13 Gene

Domains for SNORD13 Gene

Gene Families for SNORD13 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD13 Gene

Function for SNORD13 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD13 Gene

Localization for SNORD13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD13 Gene

Pathways for SNORD13 Gene

SuperPathways for SNORD13 Gene

No Data Available

Interacting Proteins for SNORD13 Gene

Gene Ontology (GO) - Biological Process for SNORD13 Gene

None

No data available for Pathways by source for SNORD13 Gene

Transcripts for SNORD13 Gene

mRNA/cDNA for SNORD13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD13

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD13 Gene

No ASD Table

Relevant External Links for SNORD13 Gene

GeneLoc Exon Structure for
SNORD13
ECgene alternative splicing isoforms for
SNORD13

Expression for SNORD13 Gene

mRNA expression in normal human tissues for SNORD13 Gene

genes like me logo Genes that share expressions with SNORD13: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD13 Gene

Orthologs for SNORD13 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU13 36
  • 98 (a)
OneToMany
snoU13 36
  • 97 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snord13 16
Species with no ortholog for SNORD13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD13 Gene

ENSEMBL:
Gene Tree for SNORD13 (if available)
TreeFam:
Gene Tree for SNORD13 (if available)

Paralogs for SNORD13 Gene

No data available for Paralogs for SNORD13 Gene

Variants for SNORD13 Gene

Relevant External Links for SNORD13 Gene

HapMap Linkage Disequilibrium report
SNORD13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SNORD13 Gene

Disorders for SNORD13 Gene

No disorders were found for SNORD13 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD13 Gene

Publications for SNORD13 Gene

  1. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 2 3
  2. Novel intron-encoded small nucleolar RNAs with long sequence complementarities to mature rRNAs involved in ribosome biogenesis. (PMID: 8721999) Bachellerie J.P. … Renalier M.H. (Biochem. Cell Biol. 1995) 3
  3. Processing of mammalian rRNA precursors at the 3' end of 18S rRNA. Identification of cis-acting signals suggests the involvement of U13 small nucleolar RNA. (PMID: 8973634) CavaillAc J. … Bachellerie J.P. (Eur. J. Biochem. 1996) 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  5. The numerous modified nucleotides in eukaryotic ribosomal RNA. (PMID: 2247610) Maden B.E. (Prog. Nucleic Acid Res. Mol. Biol. 1990) 3

Products for SNORD13 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD13
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD13
    • Block miRNA regulation of SNORD13 using miScript Target Protectors

    Sources for SNORD13 Gene

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