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Aliases for SNORD12C Gene

Subcategory (RNA class) for SNORD12C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD12C Gene

  • Small Nucleolar RNA, C/D Box 12C 2 3
  • Small Nucleolar RNA, C/D Box 106 2 3
  • RNA, U106 Small Nucleolar 2 3
  • SNORD106 3
  • RNU106 3
  • E2-1 3
  • U106 3
  • E3 3
  • E2 3

External Ids for SNORD12C Gene

ORGUL Members for SNORD12C Gene

Previous Symbols for SNORD12C Gene

  • RNU106
  • SNORD106

Summaries for SNORD12C Gene

GeneCards Summary for SNORD12C Gene

SNORD12C (Small Nucleolar RNA, C/D Box 12C) is an RNA Gene, and belongs to the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD12C Gene

Genomics for SNORD12C Gene

Genomic Location for SNORD12C Gene

Start:
49,278,940 bp from pter
End:
49,279,028 bp from pter
Size:
89 bases
Orientation:
Plus strand

Genomic View for SNORD12C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD12C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD12C Gene

Regulatory Elements for SNORD12C Gene

Proteins for SNORD12C Gene

Post-translational modifications for SNORD12C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12C Gene

Domains for SNORD12C Gene

Gene Families for SNORD12C Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD12C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD12C Gene

Function for SNORD12C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD12C Gene

Localization for SNORD12C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD12C Gene

Pathways for SNORD12C Gene

SuperPathways for SNORD12C Gene

No Data Available

Interacting Proteins for SNORD12C Gene

Gene Ontology (GO) - Biological Process for SNORD12C Gene

None

No data available for Pathways by source for SNORD12C Gene

Transcripts for SNORD12C Gene

mRNA/cDNA for SNORD12C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12C Gene

No ASD Table

Relevant External Links for SNORD12C Gene

GeneLoc Exon Structure for
SNORD12C
ECgene alternative splicing isoforms for
SNORD12C

Expression for SNORD12C Gene

mRNA expression in normal human tissues for SNORD12C Gene

genes like me logo Genes that share expressions with SNORD12C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD12C Gene

Orthologs for SNORD12C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD12 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD12 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD12 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25878 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD12 36
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD12 36
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD12 36
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD12 36
  • 77 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD12 36
  • 65 (a)
ManyToMany
Species with no ortholog for SNORD12C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD12C Gene

ENSEMBL:
Gene Tree for SNORD12C (if available)
TreeFam:
Gene Tree for SNORD12C (if available)

Paralogs for SNORD12C Gene

No data available for Paralogs for SNORD12C Gene

Variants for SNORD12C Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD12C Gene

Variant ID Type Subtype PubMed ID
nsv437839 CNV Loss 16327808

Relevant External Links for SNORD12C Gene

HapMap Linkage Disequilibrium report
SNORD12C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD12C Gene

Disorders for SNORD12C Gene

No disorders were found for SNORD12C Gene.

No data available for UniProtKB/Swiss-Prot for SNORD12C Gene

Publications for SNORD12C Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. Genes for E1, E2, and E3 small nucleolar RNAs. (PMID: 8415643) Nag M.K. … Eliceiri G.L. (Proc. Natl. Acad. Sci. U.S.A. 1993) 3

Products for SNORD12C Gene

Sources for SNORD12C Gene

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