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Aliases for SNORD12B Gene

Subcategory (RNA class) for SNORD12B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD12B Gene

  • Small Nucleolar RNA, C/D Box 12B 2 3 5

External Ids for SNORD12B Gene

ORGUL Members for SNORD12B Gene

Previous GeneCards Identifiers for SNORD12B Gene

  • GC19U900762
  • GC20P047898
  • GC20P047904
  • GC20P047909
  • GC20P047916
  • GC20P049283
  • GC20P049289
  • GC20P049293
  • GC20P049297
  • GC20P049301

Summaries for SNORD12B Gene

GeneCards Summary for SNORD12B Gene

SNORD12B (Small Nucleolar RNA, C/D Box 12B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD12B Gene

Genomics for SNORD12B Gene

Regulatory Elements for SNORD12B Gene

Enhancers for SNORD12B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G049275 2.1 FANTOM5 Ensembl ENCODE dbSUPER 20.1 -0.4 -359 9.2 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 CSE1L ZNFX1 ZFAS1 SNORD12B B4GALT5 SNORD12 ARFGEF2 ENSG00000274760 GC20P049304
GH20G050186 2.1 FANTOM5 Ensembl ENCODE dbSUPER 19.4 +911.0 910966 10.3 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SNORD12B DPM1 ENSG00000232043 LINC01273 CEBPB ZFAS1 SNORD12 PSMD10P1 MOCS3 SLC9A8
GH20G050269 2.1 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +998.3 998265 19.2 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 ZNF143 NFYC MEF2D CEBPB PTPN1 SNAI1 SLC9A8 LINC01270 ENSG00000232043 SMIM25 MIR645 LINC01273 DPM1
GH20G048830 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.9 -448.3 -448289 2.2 HDGF ZFP64 SIN3A DMAP1 ZNF48 ZBTB7B ELK1 GATA2 FOS ZNF202 PREX1 ARFGEF2 SNORD12B ZNFX1 LOC105372648
GH20G050258 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +979.8 979762 3.5 HDGF PKNOX1 FOXA2 ARNT YBX1 ZNF48 ZBTB7B ZNF207 FOS ZNF263 CEBPB ENSG00000232043 SNAI1 DPM1 MIR645 SNORD12B PSMD10P1 TMEM189 SLC9A8 PTPN1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD12B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD12B Gene

Chromosome:
20
Start:
49,280,313 bp from pter
End:
49,280,415 bp from pter
Size:
103 bases
Orientation:
Plus strand

Genomic View for SNORD12B Gene

Genes around SNORD12B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD12B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD12B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD12B Gene

Proteins for SNORD12B Gene

Post-translational modifications for SNORD12B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12B Gene

Domains & Families for SNORD12B Gene

Gene Families for SNORD12B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD12B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD12B Gene

Function for SNORD12B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD12B Gene

Localization for SNORD12B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD12B Gene

Pathways & Interactions for SNORD12B Gene

SuperPathways for SNORD12B Gene

No Data Available

Interacting Proteins for SNORD12B Gene

Gene Ontology (GO) - Biological Process for SNORD12B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD12B Gene

Drugs & Compounds for SNORD12B Gene

No Compound Related Data Available

Transcripts for SNORD12B Gene

mRNA/cDNA for SNORD12B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD12B Gene

Small nucleolar RNA, C/D box 12B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12B Gene

No ASD Table

Relevant External Links for SNORD12B Gene

GeneLoc Exon Structure for
SNORD12B
ECgene alternative splicing isoforms for
SNORD12B

Expression for SNORD12B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD12B Gene

mRNA differential expression in normal tissues according to GTEx for SNORD12B Gene

This gene is overexpressed in Whole Blood (x8.4).

NURSA nuclear receptor signaling pathways regulating expression of SNORD12B Gene:

SNORD12B

SOURCE GeneReport for Unigene cluster for SNORD12B Gene:

Hs.711216
genes like me logo Genes that share expression patterns with SNORD12B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD12B Gene

Orthologs for SNORD12B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD12 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD12 35
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD12 35
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23201 35
  • 80 (a)
ManyToMany
Gm24123 35
  • 69 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD12 35 35 35 35 35
  • 68 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD12 35 35
  • 64 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD12 35
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD12 35
  • 63 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD12 35 35 35
  • 61 (a)
ManyToMany
Species where no ortholog for SNORD12B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD12B Gene

ENSEMBL:
Gene Tree for SNORD12B (if available)
TreeFam:
Gene Tree for SNORD12B (if available)

Paralogs for SNORD12B Gene

No data available for Paralogs for SNORD12B Gene

Variants for SNORD12B Gene

Sequence variations from dbSNP and Humsavar for SNORD12B Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000070514 -- 49,279,695(+) AGGTT(C/T)CTGGT intron-variant, upstream-variant-2KB
rs1001655437 -- 49,280,476(+) TTTTT(C/T)CATTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003210719 -- 49,279,407(+) GTCAC(C/T)TGAGG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004241048 -- 49,280,077(+) TCCCA(A/T)CTCAG intron-variant, upstream-variant-2KB
rs1004465473 -- 49,279,581(+) GATTG(C/T)GCCAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD12B Gene

Variant ID Type Subtype PubMed ID
dgv1248e212 CNV loss 25503493
nsv1064443 CNV gain 25217958
nsv1067146 CNV loss 25217958
nsv437839 CNV loss 16327808

Relevant External Links for SNORD12B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD12B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD12B Gene

Disorders for SNORD12B Gene

Relevant External Links for SNORD12B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD12B

No disorders were found for SNORD12B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12B Gene

Publications for SNORD12B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SNORD12B Gene

Sources for SNORD12B Gene

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