Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD12B Gene

Subcategory (RNA class) for SNORD12B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD12B Gene

  • Small Nucleolar RNA, C/D Box 12B 2 3 5

External Ids for SNORD12B Gene

ORGUL Members for SNORD12B Gene

Previous GeneCards Identifiers for SNORD12B Gene

  • GC19U900762
  • GC20P047898
  • GC20P047904
  • GC20P047909
  • GC20P047916
  • GC20P049283
  • GC20P049289

Summaries for SNORD12B Gene

GeneCards Summary for SNORD12B Gene

SNORD12B (Small Nucleolar RNA, C/D Box 12B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD12B Gene

Genomics for SNORD12B Gene

Regulatory Elements for SNORD12B Gene

Enhancers for SNORD12B Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNORD12B on UCSC Golden Path with GeneCards custom track

Promoters for SNORD12B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNORD12B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD12B Gene

Chromosome:
20
Start:
49,280,313 bp from pter
End:
49,280,415 bp from pter
Size:
103 bases
Orientation:
Plus strand

Genomic View for SNORD12B Gene

Genes around SNORD12B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD12B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD12B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD12B Gene

Proteins for SNORD12B Gene

Post-translational modifications for SNORD12B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12B Gene

Domains & Families for SNORD12B Gene

Gene Families for SNORD12B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD12B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD12B Gene

Function for SNORD12B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD12B Gene

Localization for SNORD12B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD12B Gene

Pathways & Interactions for SNORD12B Gene

SuperPathways for SNORD12B Gene

No Data Available

Interacting Proteins for SNORD12B Gene

Gene Ontology (GO) - Biological Process for SNORD12B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD12B Gene

Drugs & Compounds for SNORD12B Gene

No Compound Related Data Available

Transcripts for SNORD12B Gene

mRNA/cDNA for SNORD12B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD12B Gene

Small nucleolar RNA, C/D box 12B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12B Gene

No ASD Table

Relevant External Links for SNORD12B Gene

GeneLoc Exon Structure for
SNORD12B
ECgene alternative splicing isoforms for
SNORD12B

Expression for SNORD12B Gene

mRNA expression in normal human tissues for SNORD12B Gene

mRNA differential expression in normal tissues according to GTEx for SNORD12B Gene

This gene is overexpressed in Whole Blood (x8.4).

SOURCE GeneReport for Unigene cluster for SNORD12B Gene Hs.711216

genes like me logo Genes that share expression patterns with SNORD12B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD12B Gene

Orthologs for SNORD12B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORD12 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD12 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD12 36
  • 64 (a)
ManyToMany
SNORD12 36
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23201 36
  • 80 (a)
ManyToMany
Gm24123 36
  • 69 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD12 36
  • 68 (a)
ManyToMany
SNORD12 36
  • 68 (a)
ManyToMany
SNORD12 36
  • 68 (a)
ManyToMany
SNORD12 36
  • 73 (a)
ManyToMany
SNORD12 36
  • 63 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORD12 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD12 36
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD12 36
  • 63 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD12 36
  • 64 (a)
ManyToMany
SNORD12 36
  • 66 (a)
ManyToMany
SNORD12 36
  • 61 (a)
ManyToMany
Species with no ortholog for SNORD12B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD12B Gene

ENSEMBL:
Gene Tree for SNORD12B (if available)
TreeFam:
Gene Tree for SNORD12B (if available)

Paralogs for SNORD12B Gene

No data available for Paralogs for SNORD12B Gene

Variants for SNORD12B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD12B Gene

Variant ID Type Subtype PubMed ID
nsv437839 CNV Loss 16327808

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for SNORD12B Gene

Disorders for SNORD12B Gene

Relevant External Links for SNORD12B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD12B

No disorders were found for SNORD12B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12B Gene

Publications for SNORD12B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 67
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3

Products for SNORD12B Gene

Sources for SNORD12B Gene

Content