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Aliases for SNORD127 Gene

Subcategory (RNA class) for SNORD127 Gene

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Quality Score for this RNA gene is

3

Aliases for SNORD127 Gene

  • Small Nucleolar RNA, C/D Box 127 2 3 5

External Ids for SNORD127 Gene

ORGUL Members for SNORD127 Gene

Previous GeneCards Identifiers for SNORD127 Gene

  • GC14U900761
  • GC14P044649
  • GC14P045580
  • GC14P025690

Summaries for SNORD127 Gene

GeneCards Summary for SNORD127 Gene

SNORD127 (Small Nucleolar RNA, C/D Box 127) is an RNA Gene, and is affiliated with the undefined RNA class.

Additional gene information for SNORD127 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD127 Gene

Genomics for SNORD127 Gene

Regulatory Elements for SNORD127 Gene

Enhancers for SNORD127 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H045090 0.6 ENCODE 12 -20.8 -20783 0 PKNOX1 JUNB BATF MAFF IKZF1 ATF7 FOS RUNX3 MAFK SP7 SNORD127 ENSG00000212615 GC14P045107 GC14P045108
GH14H045138 0.4 FANTOM5 10.4 +27.6 27598 0 PRDM1 LOC105370474 PRPF39 ENSG00000212615 KLHL28 TOGARAM1 SNORD127 LINC02302 FANCM GC14M044793
GH14H044940 0.2 ENCODE 10.5 -169.9 -169888 0 C14orf28 LINC02302 SNORD127 GC14M044938 TOGARAM1
GH14H044944 0.2 ENCODE 10.5 -165.4 -165398 1 C14orf28 SNORD127 GC14M044938 TOGARAM1
GH14H045139 0.2 Ensembl 10.4 +28.0 28026 0 LOC105370474 PRPF39 ENSG00000212615 KLHL28 TOGARAM1 SNORD127 LINC02302 FANCM GC14M044793
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD127 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD127 Gene

Chromosome:
14
Start:
45,110,875 bp from pter
End:
45,110,975 bp from pter
Size:
101 bases
Orientation:
Plus strand

Genomic View for SNORD127 Gene

Genes around SNORD127 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD127 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD127 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD127 Gene

Proteins for SNORD127 Gene

Post-translational modifications for SNORD127 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD127 Gene

Domains & Families for SNORD127 Gene

Gene Families for SNORD127 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD127: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD127 Gene

Function for SNORD127 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD127
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD127 Gene

Localization for SNORD127 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD127 Gene

Pathways & Interactions for SNORD127 Gene

SuperPathways for SNORD127 Gene

No Data Available

Interacting Proteins for SNORD127 Gene

Gene Ontology (GO) - Biological Process for SNORD127 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD127 Gene

Drugs & Compounds for SNORD127 Gene

No Compound Related Data Available

Transcripts for SNORD127 Gene

mRNA/cDNA for SNORD127 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD127
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD127 Gene

No ASD Table

Relevant External Links for SNORD127 Gene

GeneLoc Exon Structure for
SNORD127
ECgene alternative splicing isoforms for
SNORD127

Expression for SNORD127 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD127 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD127 Gene:

SNORD127

SOURCE GeneReport for Unigene cluster for SNORD127 Gene:

Hs.712501
genes like me logo Genes that share expression patterns with SNORD127: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD127 Gene

Orthologs for SNORD127 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD127 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD127 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD127 34
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD127 34
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD127 34
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25970 34
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD127 34 34
  • 82 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD127 34
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD127 34
  • 64 (a)
OneToOne
Species where no ortholog for SNORD127 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD127 Gene

ENSEMBL:
Gene Tree for SNORD127 (if available)
TreeFam:
Gene Tree for SNORD127 (if available)

Paralogs for SNORD127 Gene

No data available for Paralogs for SNORD127 Gene

Variants for SNORD127 Gene

Sequence variations from dbSNP and Humsavar for SNORD127 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1001142355 -- 45,109,914(+) CAACC(A/T)GATTT intron-variant, upstream-variant-2KB
rs1001255531 -- 45,109,439(+) TTTCA(-/TTTG)TTTGT intron-variant, upstream-variant-2KB
rs1003219657 -- 45,111,034(+) TAAAA(C/T)TGTTG intron-variant, downstream-variant-500B
rs1006115917 -- 45,109,067(+) CCTAC(C/G)TCCTC intron-variant, upstream-variant-2KB
rs1006457475 -- 45,109,362(+) TCAAC(A/G)AAGTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD127 Gene

Variant ID Type Subtype PubMed ID
nsv832785 CNV loss 17160897

Relevant External Links for SNORD127 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD127

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD127 Gene

Disorders for SNORD127 Gene

Relevant External Links for SNORD127

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD127

No disorders were found for SNORD127 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD127 Gene

Publications for SNORD127 Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 60

Products for SNORD127 Gene

Sources for SNORD127 Gene

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