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Aliases for SNORD125 Gene

Subcategory (RNA class) for SNORD125 Gene

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Quality Score for this RNA gene is

4

Aliases for SNORD125 Gene

  • Small Nucleolar RNA, C/D Box 125 2 3 5

External Ids for SNORD125 Gene

Previous GeneCards Identifiers for SNORD125 Gene

  • GC22U900386
  • GC22M028059
  • GC22M029729
  • GC22M012693

Summaries for SNORD125 Gene

GeneCards Summary for SNORD125 Gene

SNORD125 (Small Nucleolar RNA, C/D Box 125) is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for SNORD125 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD125 Gene

Genomics for SNORD125 Gene

Regulatory Elements for SNORD125 Gene

Enhancers for SNORD125 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G029381 1.6 Ensembl ENCODE dbSUPER 12.1 -52.1 -52147 8.1 HDGF PKNOX1 CREB3L1 ARNT ZFP64 SIN3A ARID4B DMAP1 ZNF2 YY1 RASL10A AP1B1 SNORD125 GAS2L1 RHBDD3 LOC102723305 MIR3653
GH22G029368 1.3 FANTOM5 Ensembl ENCODE 11.9 -36.3 -36279 1.3 HDGF ZNF266 MAX RBBP5 ZIC2 FOSL1 ZNF121 FOS PRDM10 ZNF263 AP1B1 RASL10A SNORD125 NEFH ZNRF3 CABP7 MIR3653 LOC102723305
GH22G029375 1 ENCODE dbSUPER 12.2 -43.8 -43762 3.4 CTCF NFIB CEBPG RAD21 ZNF121 CTBP1 GATA3 POLR2A SMC3 FOSL2 AP1B1 RASL10A SNORD125 NIPSNAP1 RHBDD3 LOC102723305 MIR3653
GH22G029276 0.5 dbSUPER 11.7 +55.7 55745 1.8 ZNF263 PAF1 POLR2A GLIS1 GAS2L1 RASL10A SNORD125 AP1B1 C22orf31 RHBDD3
GH22G029328 0.9 ENCODE 0.7 +3.1 3052 3.6 RB1 RAD21 GLIS2 PCBP1 CREM EGR2 ZNF263 SMARCA5 CEBPB ZNF398 GAS2L1 AP1B1 RHBDD3 SNORD125 RASL10A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD125 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD125 Gene

Chromosome:
22
Start:
29,333,163 bp from pter
End:
29,333,258 bp from pter
Size:
96 bases
Orientation:
Minus strand

Genomic View for SNORD125 Gene

Genes around SNORD125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD125 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD125 Gene

ORGUL Member Location for SNORD125 Gene

ORGUL Member Location for SNORD125 gene

Proteins for SNORD125 Gene

Post-translational modifications for SNORD125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD125 Gene

Domains & Families for SNORD125 Gene

Gene Families for SNORD125 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD125: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD125 Gene

Function for SNORD125 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD125 Gene

Localization for SNORD125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD125 Gene

Pathways & Interactions for SNORD125 Gene

SuperPathways for SNORD125 Gene

No Data Available

Interacting Proteins for SNORD125 Gene

Gene Ontology (GO) - Biological Process for SNORD125 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD125 Gene

Drugs & Compounds for SNORD125 Gene

No Compound Related Data Available

Transcripts for SNORD125 Gene

mRNA/cDNA for SNORD125 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD125 Gene

No ASD Table

Relevant External Links for SNORD125 Gene

GeneLoc Exon Structure for
SNORD125
ECgene alternative splicing isoforms for
SNORD125

Expression for SNORD125 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD125 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD125 Gene:

SNORD125
genes like me logo Genes that share expression patterns with SNORD125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD125 Gene

Orthologs for SNORD125 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD125 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD125 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD125 35
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD125 35 35
  • 82 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24958 35
  • 80 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD125 35
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD125 35
  • 66 (a)
OneToOne
Species where no ortholog for SNORD125 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD125 Gene

ENSEMBL:
Gene Tree for SNORD125 (if available)
TreeFam:
Gene Tree for SNORD125 (if available)

Paralogs for SNORD125 Gene

No data available for Paralogs for SNORD125 Gene

Variants for SNORD125 Gene

Sequence variations from dbSNP and Humsavar for SNORD125 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000132468 -- 29,335,222(+) TCCAC(C/T)AGCGG intron-variant, upstream-variant-2KB
rs1000449335 -- 29,333,866(+) CGAGA(A/C)CAGCC intron-variant, upstream-variant-2KB
rs1000800621 -- 29,333,702(+) AAAAA(C/G)AAAGA intron-variant, upstream-variant-2KB
rs1001127885 -- 29,333,019(+) AGTAA(C/G)TTTGC intron-variant, downstream-variant-500B
rs1001181841 -- 29,333,217(+) ATGAG(C/T)GTGCT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD125 Gene

Variant ID Type Subtype PubMed ID
nsv834171 CNV loss 17160897

Relevant External Links for SNORD125 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD125

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD125 Gene

Disorders for SNORD125 Gene

Relevant External Links for SNORD125

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD125

No disorders were found for SNORD125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD125 Gene

Publications for SNORD125 Gene

  1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin B.M. … Amundadottir L.T. (Nat. Genet. 2014) 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64
  4. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) . … Gojobori T. (Nucleic Acids Res. 2008) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T. … Sugano S. (PLoS Biol. 2004) 1

Products for SNORD125 Gene

Sources for SNORD125 Gene

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