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Aliases for SNORD124 Gene

Subcategory (RNA class) for SNORD124 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD124 Gene

  • Small Nucleolar RNA, C/D Box 124 2 3 5

External Ids for SNORD124 Gene

Previous GeneCards Identifiers for SNORD124 Gene

  • GC17U900835
  • GC17M035437
  • GC17M038183
  • GC17P033977
  • GC17P038183

Summaries for SNORD124 Gene

GeneCards Summary for SNORD124 Gene

SNORD124 (Small Nucleolar RNA, C/D Box 124) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD124 Gene

Genomics for SNORD124 Gene

Regulatory Elements for SNORD124 Gene

Enhancers for SNORD124 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F040306 1.1 FANTOM5 ENCODE 44.3 -289.9 -289881 22.8 CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 ZNF143 ZNF263 SP3 NFYC ENSG00000266469 MED1 CDK12 SNORD124 RARA TMEM99 MSL1 LOC105371776 KRTAP9-2 CDC6
GH17F040509 1.2 FANTOM5 Ensembl ENCODE 35.2 -484.0 -483993 4.3 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF302 ZNF143 SNORD124 TMEM99 IGFBP4 RPL23AP75 MSL1 TOP2A CDC6 RARA PNMT TNS4
GH17F039978 1 ENCODE 14.2 +47.2 47175 4.0 CREB3L1 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 CDK12 ENSG00000266469 MED1 GSDMA IGFBP4 RPL19 LINC02079 LOC105371776 SNORD124 LRRC3C
GH17F039728 0.2 ENCODE 14.1 +297.6 297648 2.4 MLX ARID4B SIN3A ZNF2 SLC30A9 ZNF766 ZNF143 SP3 SP5 NFYC SNORD124 GSDMA ORMDL3 GSDMB MIR4728 MIEN1
GH17F040515 1 FANTOM5 Ensembl ENCODE 14.1 -492.3 -492286 9.9 PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SLC30A9 SNORD124 TOP2A CDC6 CCR7 IGFBP4 RPL23AP75 GJD3 RARA SMARCE1 LOC390791
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD124 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the SNORD124 gene promoter:

Genomic Location for SNORD124 Gene

Chromosome:
17
Start:
40,027,542 bp from pter
End:
40,027,645 bp from pter
Size:
104 bases
Orientation:
Minus strand

Genomic View for SNORD124 Gene

Genes around SNORD124 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD124 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD124 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD124 Gene

Proteins for SNORD124 Gene

Post-translational modifications for SNORD124 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD124 Gene

Domains & Families for SNORD124 Gene

Gene Families for SNORD124 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD124: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD124 Gene

Function for SNORD124 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD124 Gene

Localization for SNORD124 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD124 Gene

Pathways & Interactions for SNORD124 Gene

SuperPathways for SNORD124 Gene

No Data Available

Interacting Proteins for SNORD124 Gene

Gene Ontology (GO) - Biological Process for SNORD124 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD124 Gene

Transcripts for SNORD124 Gene

mRNA/cDNA for SNORD124 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD124 Gene

No ASD Table

Relevant External Links for SNORD124 Gene

GeneLoc Exon Structure for
SNORD124
ECgene alternative splicing isoforms for
SNORD124

Expression for SNORD124 Gene

mRNA expression in normal human tissues for SNORD124 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD124 Gene:

SNORD124
genes like me logo Genes that share expression patterns with SNORD124: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD124 Gene

Orthologs for SNORD124 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD124 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD124 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD124 35
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD124 35
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22059 35
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD124 35
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD124 35
  • 54 (a)
OneToOne
Species where no ortholog for SNORD124 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD124 Gene

ENSEMBL:
Gene Tree for SNORD124 (if available)
TreeFam:
Gene Tree for SNORD124 (if available)

Paralogs for SNORD124 Gene

No data available for Paralogs for SNORD124 Gene

Variants for SNORD124 Gene

Sequence variations from dbSNP and Humsavar for SNORD124 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111673294 -- 40,028,823(+) TTCCT(C/T)ACTTG intron-variant, upstream-variant-2KB
rs112077919 -- 40,027,489(+) GCTGA(C/G)CTCCC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112639732 -- 40,028,574(+) TGCCC(A/G)ATGTT intron-variant, upstream-variant-2KB
rs112943715 -- 40,027,507(+) GGCAG(C/G/T)GGGGA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs113607079 -- 40,027,947(+) TCAAA(C/T)TGAAA upstream-variant-2KB, reference, missense, splice-acceptor-variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD124 Gene

Variant ID Type Subtype PubMed ID
esv3573064 CNV gain 25503493
nsv1146669 OTHER inversion 26484159

Relevant External Links for SNORD124 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD124

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD124 Gene

Disorders for SNORD124 Gene

Relevant External Links for SNORD124

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD124

No disorders were found for SNORD124 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD124 Gene

Publications for SNORD124 Gene

  1. Multiple loci are associated with white blood cell phenotypes. (PMID: 21738480) Nalls M.A. … Ganesh S.K. (PLoS Genet. 2011) 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SNORD124 Gene

Sources for SNORD124 Gene

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