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Aliases for SNORD123 Gene

Subcategory (RNA class) for SNORD123 Gene

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Quality Score for this RNA gene is

3

Aliases for SNORD123 Gene

  • Small Nucleolar RNA, C/D Box 123 2 3 5

External Ids for SNORD123 Gene

ORGUL Members for SNORD123 Gene

Previous GeneCards Identifiers for SNORD123 Gene

  • GC05U900777
  • GC05P009601
  • GC05P009532

Summaries for SNORD123 Gene

GeneCards Summary for SNORD123 Gene

SNORD123 (Small Nucleolar RNA, C/D Box 123) is an RNA Gene, and is affiliated with the undefined RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD123 Gene

Genomics for SNORD123 Gene

Regulatory Elements for SNORD123 Gene

Enhancers for SNORD123 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F009483 1.2 Ensembl ENCODE 10.3 -65.0 -65045 1.5 SNHG18 SEMA5A SNORD123 ENSG00000272417 ENSG00000279698 GC05P009389
GH05F009284 0.8 Ensembl ENCODE 10 -263.7 -263738 1.5 SEMA5A SNORD123 GC05P009281 GC05M009285
GH05F009408 0.2 ENCODE 9.8 -138.4 -138370 3.6 ATF3 ZBTB33 RAD21 YY1 NR2F2 ENSG00000248537 SEMA5A SNORD123 GC05P009389 ENSG00000279698
GH05F009552 0.2 ENCODE 0.8 +5.0 4994 1.8 SNHG18 SNORD123 LOC101929359
GH05F009557 0.2 ENCODE 0.4 +9.6 9585 1.4 CEBPG FOS RAD21 SNHG18 SEMA5A SNORD123 LOC101929359
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD123 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD123 Gene

Chromosome:
5
Start:
9,548,827 bp from pter
End:
9,548,914 bp from pter
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD123 Gene

Genes around SNORD123 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD123 Gene

Proteins for SNORD123 Gene

Post-translational modifications for SNORD123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD123 Gene

Domains & Families for SNORD123 Gene

Gene Families for SNORD123 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD123: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD123 Gene

Function for SNORD123 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD123 Gene

Localization for SNORD123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD123 Gene

Pathways & Interactions for SNORD123 Gene

SuperPathways for SNORD123 Gene

No Data Available

Interacting Proteins for SNORD123 Gene

Gene Ontology (GO) - Biological Process for SNORD123 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD123 Gene

Transcripts for SNORD123 Gene

mRNA/cDNA for SNORD123 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD123 Gene

No ASD Table

Relevant External Links for SNORD123 Gene

GeneLoc Exon Structure for
SNORD123
ECgene alternative splicing isoforms for
SNORD123

Expression for SNORD123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD123 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD123 Gene:

SNORD123
genes like me logo Genes that share expression patterns with SNORD123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD123 Gene

Orthologs for SNORD123 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD123 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD123 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD123 35
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD123 35
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord123 35
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD123 35
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD123 35
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD123 35
  • 94 (a)
OneToOne
Species where no ortholog for SNORD123 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD123 Gene

ENSEMBL:
Gene Tree for SNORD123 (if available)
TreeFam:
Gene Tree for SNORD123 (if available)

Paralogs for SNORD123 Gene

No data available for Paralogs for SNORD123 Gene

Variants for SNORD123 Gene

Sequence variations from dbSNP and Humsavar for SNORD123 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs113068727 -- 9,547,466(+) CAATG(C/G)AAATA intron-variant, upstream-variant-2KB
rs113903072 -- 9,548,292(+) TTGTG(-/ATA)ATTAA intron-variant, upstream-variant-2KB
rs113930990 -- 9,547,934(+) GGGAG(A/G)AAGCT intron-variant, upstream-variant-2KB
rs115485545 -- 9,548,353(+) AGTGC(A/T)TCCTT intron-variant, upstream-variant-2KB
rs115766208 -- 9,548,764(+) AAATA(C/T)AGCTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD123 Gene

Variant ID Type Subtype PubMed ID
dgv5565n100 CNV gain 25217958
nsv1032672 CNV gain 25217958
nsv597071 CNV gain 21841781
nsv597073 CNV loss 21841781

Relevant External Links for SNORD123 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD123

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD123 Gene

Disorders for SNORD123 Gene

Relevant External Links for SNORD123

Genetic Association Database (GAD)
SNORD123
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD123

No disorders were found for SNORD123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD123 Gene

Publications for SNORD123 Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  2. A genome-wide linkage and association scan reveals novel loci for autism. (PMID: 19812673) Weiss L.A. … Chakravarti A. (Nature 2009) 46 64
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  5. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SNORD123 Gene

Sources for SNORD123 Gene

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