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Aliases for SNORD121A Gene

Subcategory (RNA class) for SNORD121A Gene

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Quality Score for this RNA gene is

3

Aliases for SNORD121A Gene

  • Small Nucleolar RNA, C/D Box 121A 2 3 5

External Ids for SNORD121A Gene

ORGUL Members for SNORD121A Gene

Previous GeneCards Identifiers for SNORD121A Gene

  • GC09U900878

Summaries for SNORD121A Gene

GeneCards Summary for SNORD121A Gene

SNORD121A (Small Nucleolar RNA, C/D Box 121A) is an RNA Gene, and is affiliated with the undefined RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD121A Gene

Genomics for SNORD121A Gene

Regulatory Elements for SNORD121A Gene

Enhancers for SNORD121A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F033924 0.7 ENCODE 11.6 +27.0 27021 2.1 ZNF263 CTCF ZNF654 ZNF48 RAD21 SSRP1 JUND POLR2A SMC3 SNORD121A UBE2R2 ENSG00000260947 DCAF12 GC09M033934 SNORD121B RNU4ATAC11P
GH09F034071 1.2 Ensembl ENCODE 11 -120.2 -120240 3.0 ARNT ARID4B SIN3A DMAP1 YY1 ZNF121 ZNF143 FOS ZNF263 MIER2 UBAP2 RNU4ATAC11P DCAF12 IMPDH1P1 SNORD121A ENSG00000260947 UBE2R2 ENSG00000228352 RN7SKP114
GH09F033882 0.2 Ensembl 10.8 +70.4 70354 0.2 UBE2R2 SNORD121B UBAP2 SNORD121A ENSG00000228352 RNU2-50P RNU4ATAC11P GC09M033934
GH09F033878 0.2 Ensembl 10.8 +73.3 73254 2.8 ZNF263 ZNF362 HINFP ZIC2 ATF2 ZNF664 ZFHX2 SMARCA4 ZNF600 ZBTB17 UBE2R2 SNORD121B UBAP2 SNORD121A ENSG00000228352 RNU2-50P LINC01251 RNU4ATAC11P GC09M033934
GH09F033884 1.1 Ensembl ENCODE 10.8 +67.5 67532 0.9 ZBTB48 NFIA BCL6 TRIM28 UBE2R2 SNORD121B UBAP2 SNORD121A ENSG00000228352 RNU2-50P RNU4ATAC11P GC09M033934
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD121A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD121A Gene

Chromosome:
9
Start:
33,952,764 bp from pter
End:
33,952,854 bp from pter
Size:
91 bases
Orientation:
Minus strand

Genomic View for SNORD121A Gene

Genes around SNORD121A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD121A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD121A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD121A Gene

Proteins for SNORD121A Gene

Post-translational modifications for SNORD121A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD121A Gene

Domains & Families for SNORD121A Gene

Gene Families for SNORD121A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD121A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD121A Gene

Function for SNORD121A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD121A Gene

Localization for SNORD121A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD121A Gene

Pathways & Interactions for SNORD121A Gene

SuperPathways for SNORD121A Gene

No Data Available

Interacting Proteins for SNORD121A Gene

Gene Ontology (GO) - Biological Process for SNORD121A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD121A Gene

Transcripts for SNORD121A Gene

mRNA/cDNA for SNORD121A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD121A Gene

No ASD Table

Relevant External Links for SNORD121A Gene

GeneLoc Exon Structure for
SNORD121A
ECgene alternative splicing isoforms for
SNORD121A

Expression for SNORD121A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD121A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD121A Gene:

SNORD121A
genes like me logo Genes that share expression patterns with SNORD121A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD121A Gene

Orthologs for SNORD121A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD121A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD121A 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD121A 35
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23090 35
  • 91 (a)
OneToMany
Gm24837 35
  • 83 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD121A 35
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD121A 35
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD121A 35
  • 80 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD121A 35 35
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD121A 35
  • 72 (a)
OneToOne
Species where no ortholog for SNORD121A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD121A Gene

ENSEMBL:
Gene Tree for SNORD121A (if available)
TreeFam:
Gene Tree for SNORD121A (if available)

Paralogs for SNORD121A Gene

No data available for Paralogs for SNORD121A Gene

Variants for SNORD121A Gene

Sequence variations from dbSNP and Humsavar for SNORD121A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10971819 -- 33,954,149(+) TGAGC(C/T)GCCTG intron-variant, upstream-variant-2KB
rs10971820 -- 33,954,301(+) ACACA(C/T)GCCCA intron-variant, upstream-variant-2KB
rs139029922 -- 33,953,508(+) AGTCA(C/G/T)AAGCA intron-variant, upstream-variant-2KB
rs139576686 -- 33,954,577(+) TTCTC(A/G)CCATG intron-variant, upstream-variant-2KB
rs139901839 -- 33,953,312(+) TTGAC(A/G)GCAGT upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNORD121A Gene

Variant ID Type Subtype PubMed ID
esv3620335 CNV gain 21293372
nsv1125318 OTHER inversion 24896259
nsv520467 CNV gain 19592680
nsv614153 CNV loss 21841781
nsv831541 CNV loss 17160897

Relevant External Links for SNORD121A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD121A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD121A Gene

Disorders for SNORD121A Gene

Relevant External Links for SNORD121A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD121A

No disorders were found for SNORD121A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD121A Gene

Publications for SNORD121A Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SNORD121A Gene

Sources for SNORD121A Gene

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