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Aliases for SNORD12 Gene

Subcategory (RNA class) for SNORD12 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD12 Gene

  • Small Nucleolar RNA, C/D Box 12 2 3 5
  • MicroRNA 1259 2 3
  • Hsa-Mir-1259 3
  • MIRN1259 3
  • HBII-99 3
  • MIR1259 3

External Ids for SNORD12 Gene

ORGUL Members for SNORD12 Gene

Previous HGNC Symbols for SNORD12 Gene

  • MIR1259
  • MIRN1259

Previous GeneCards Identifiers for SNORD12 Gene

  • GC20P047332
  • GC20P047335
  • GC20P047339
  • GC20P047343
  • GC20P047345
  • GC20P047897
  • GC20P044646
  • GC20P049285
  • GC20P049290
  • GC20P049294
  • GC20P049298

Summaries for SNORD12 Gene

GeneCards Summary for SNORD12 Gene

SNORD12 (Small Nucleolar RNA, C/D Box 12) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD12 Gene

Genomics for SNORD12 Gene

Regulatory Elements for SNORD12 Gene

Enhancers for SNORD12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F049275 1.6 FANTOM5 ENCODE 10.5 -0.7 -729 9.2 CREB3L1 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 CSE1L ZNFX1 ZFAS1 SNORD12B B4GALT5 PTGIS SLC9A8 SNORD12 ARFGEF2 ENSG00000274760
GH20F050186 1.6 FANTOM5 ENCODE 9.8 +910.7 910693 10.1 MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC DPM1 ENSG00000232043 SNORD12B PSMD10P1 LINC01273 ENSG00000199490 RPSAP1 SLC9A8 MOCS3 PTPN1
GH20F049981 1.4 FANTOM5 ENCODE 9.8 +702.8 702848 3.3 HDGF ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 SLC9A8 SNAI1 DPM1 SNORD12B LINC01273 ZFAS1 ENSG00000232043 SNORD12 CEBPB B4GALT5
GH20F049323 1.1 Ensembl ENCODE 10.6 +43.3 43266 1.1 HDGF PKNOX1 ARNT SIN3A RAD21 RFX5 ZNF207 FOS ETV6 CREM ZNFX1 KCNB1 SNORD12 SNORD12B ARFGEF2 LOC105372649 GC20M049341
GH20F049236 0.9 ENCODE 12.2 -43.0 -43024 1.4 ELF3 HDGF PKNOX1 CBX3 ARID4B SIN3A RAD21 ZNF48 ELK1 CBX5 CSE1L ZFAS1 ZNFX1 SNORD12 SNORD12B SNORD12C STAU1 PIR41098 DDX27
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD12 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001838119 817 201 ELF3 HDAC1 ATF1 ARID4B SIN3A DNMT3B RARA ZNF143 CREM THAP11

Genomic Location for SNORD12 Gene

Chromosome:
20
Start:
49,280,683 bp from pter
End:
49,280,772 bp from pter
Size:
90 bases
Orientation:
Plus strand

Genomic View for SNORD12 Gene

Genes around SNORD12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD12 Gene

Proteins for SNORD12 Gene

Post-translational modifications for SNORD12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12 Gene

Domains & Families for SNORD12 Gene

Gene Families for SNORD12 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD12: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD12 Gene

Function for SNORD12 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD12 Gene

Localization for SNORD12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD12 Gene

Pathways & Interactions for SNORD12 Gene

SuperPathways for SNORD12 Gene

No Data Available

Interacting Proteins for SNORD12 Gene

Gene Ontology (GO) - Biological Process for SNORD12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD12 Gene

Transcripts for SNORD12 Gene

mRNA/cDNA for SNORD12 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12 Gene

No ASD Table

Relevant External Links for SNORD12 Gene

GeneLoc Exon Structure for
SNORD12
ECgene alternative splicing isoforms for
SNORD12

Expression for SNORD12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD12 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD12 Gene:

SNORD12
genes like me logo Genes that share expression patterns with SNORD12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD12 Gene

Orthologs for SNORD12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD12 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD12 35
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD12 35
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord12 35
  • 82 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD12 35
  • 67 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD12 35
  • 67 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD12 35
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD12 35
  • 58 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD12 35
  • 66 (a)
ManyToMany
Species where no ortholog for SNORD12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD12 Gene

ENSEMBL:
Gene Tree for SNORD12 (if available)
TreeFam:
Gene Tree for SNORD12 (if available)

Paralogs for SNORD12 Gene

No data available for Paralogs for SNORD12 Gene

Variants for SNORD12 Gene

Sequence variations from dbSNP and Humsavar for SNORD12 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111518602 -- 49,278,719(+) CCCGT(A/G/T)AGTTC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112394628 -- 49,279,103(+) TCACA(C/G)GTTAG downstream-variant-500B, upstream-variant-2KB, splice-acceptor-variant
rs112684977 -- 49,280,483(+) ATTTC(A/G)GGTTT intron-variant, downstream-variant-500B, upstream-variant-2KB, splice-acceptor-variant
rs113003243 -- 49,280,484(+) TTTCA(A/C/G)GTTTA intron-variant, downstream-variant-500B, upstream-variant-2KB, splice-acceptor-variant
rs1133114 -- 49,280,569(+) AAAAT(C/T)GGTAA intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD12 Gene

Variant ID Type Subtype PubMed ID
nsv437839 CNV loss 16327808
nsv1067146 CNV loss 25217958
nsv1064443 CNV gain 25217958
dgv1248e212 CNV loss 25503493

Relevant External Links for SNORD12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD12 Gene

Disorders for SNORD12 Gene

Relevant External Links for SNORD12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD12

No disorders were found for SNORD12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12 Gene

Publications for SNORD12 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD12 Gene

Sources for SNORD12 Gene

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