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Aliases for SNORD118 Gene

Subcategory (RNA class) for SNORD118 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD118 Gene

  • Small Nucleolar RNA, C/D Box 118 2 3 5
  • LCC 3
  • U8 3

External Ids for SNORD118 Gene

ORGUL Members for SNORD118 Gene

Previous GeneCards Identifiers for SNORD118 Gene

  • GC17U900626
  • GC17M008078
  • GC17M008079
  • GC17M008081
  • GC17M008083
  • GC17M008088
  • GC17M008114
  • GC17M008189
  • GC17M008238
  • GC17M008274
  • GC17M008300
  • GC17M008338

Summaries for SNORD118 Gene

GeneCards Summary for SNORD118 Gene

SNORD118 (Small Nucleolar RNA, C/D Box 118) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD118 include Leukoencephalopathy, Cerebral Calcifications, And Cysts and Hepatocellular Carcinoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD118 Gene

Genomics for SNORD118 Gene

Regulatory Elements for SNORD118 Gene

Enhancers for SNORD118 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F008133 0.6 ENCODE 12.4 +39.9 39946 0.7 ZNF146 ZNF280D MAX ZMYM3 ZNF341 ZNF580 FOS KDM1A SNORD118 TMEM107 BORCS6 CHD3 AURKB PFAS CTC1 ALOX15B GC17M008404 TRS-CGA1-1
GH17F008128 0.8 FANTOM5 12.4 +45.0 44999 0.2 RFX1 ZBTB2 FOXA3 FOXA1 RARA GATA3 MIER3 ZNF366 CEBPA NR2F6 ODF4 SNORD118 TMEM107 BORCS6 CHD3 ALOX15B CNTROB LOC105376799 GC17M008404 TRS-CGA1-1
GH17F008126 0.6 ENCODE 12.4 +47.0 46999 2.1 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZNF2 ZNF143 FOS DEK SP3 LOC105371523 HES7 NEURL4 MIR6883 DVL2 PFAS SNORD10 CTC1 SNORD118 TMEM107
GH17F008134 0.5 ENCODE 12.1 +39.5 39516 0.0 JUND ZNF146 ZNF280D ZNF580 ZMYM3 FOS SNORD118 TMEM107 AURKB CTC1 PFAS GC17M008404 TRS-CGA1-1 LOC105376799
GH17F008117 0.2 ENCODE 11.7 +52.3 52321 7.7 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF207 ZNF143 LOC105371523 NEURL4 HES7 CTC1 MIR6883 ENSG00000271029 DVL2 SPEM1 PFAS NLGN2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD118 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD118 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001340411 -112 1401 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3

Genomic Location for SNORD118 Gene

Chromosome:
17
Start:
8,173,453 bp from pter
End:
8,173,588 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for SNORD118 Gene

Genes around SNORD118 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD118 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD118 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD118 Gene

Proteins for SNORD118 Gene

Post-translational modifications for SNORD118 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD118 Gene

Domains & Families for SNORD118 Gene

Gene Families for SNORD118 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD118: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD118 Gene

Function for SNORD118 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD118 Gene

Localization for SNORD118 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD118 Gene

Pathways & Interactions for SNORD118 Gene

SuperPathways for SNORD118 Gene

No Data Available

Interacting Proteins for SNORD118 Gene

Gene Ontology (GO) - Biological Process for SNORD118 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD118 Gene

Transcripts for SNORD118 Gene

mRNA/cDNA for SNORD118 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD118 Gene

No ASD Table

Relevant External Links for SNORD118 Gene

GeneLoc Exon Structure for
SNORD118
ECgene alternative splicing isoforms for
SNORD118

Expression for SNORD118 Gene

mRNA expression in normal human tissues for SNORD118 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD118 Gene:

SNORD118
genes like me logo Genes that share expression patterns with SNORD118: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD118 Gene

Orthologs for SNORD118 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD118 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U8 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U8 35
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U8 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25369 35
  • 65 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U8 35
  • 63 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea U8 35
  • 52 (a)
OneToMany
Species where no ortholog for SNORD118 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD118 Gene

ENSEMBL:
Gene Tree for SNORD118 (if available)
TreeFam:
Gene Tree for SNORD118 (if available)

Paralogs for SNORD118 Gene

No data available for Paralogs for SNORD118 Gene

Variants for SNORD118 Gene

Sequence variations from dbSNP and Humsavar for SNORD118 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs201787275 Pathogenic 8,173,444(+) TGATC(A/G)TCAGA downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs75008470 Pathogenic 8,173,448(+) CGTCA(A/C/G)AAAGA downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs752171066 Pathogenic 8,174,573(+) AATAT(-/GAA)GAAGG upstream-variant-2KB, cds-indel
rs755495846 Pathogenic 8,173,531(+) AATCA(A/C/G/T)CATGT nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs111578105 -- 8,173,340(+) AGCAA(C/G/T)AGCAA downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SNORD118 Gene

Variant ID Type Subtype PubMed ID
nsv1964 CNV insertion 18451855
nsv527475 CNV loss 19592680
nsv827879 CNV gain 20364138
nsv833352 CNV loss 17160897
nsv833353 CNV loss 17160897

Relevant External Links for SNORD118 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD118

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD118 Gene

Disorders for SNORD118 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SNORD118 Gene - From: ClinVar

Disorder Aliases PubMed IDs
leukoencephalopathy, cerebral calcifications, and cysts
  • lcc
hepatocellular carcinoma
  • hepatocellular carcinoma, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SNORD118: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD118 Gene

Publications for SNORD118 Gene

  1. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K. … Steitz J.A. (EMBO J. 1989) 2 3 64
  2. Primary and secondary structure of U8 small nuclear RNA. (PMID: 2411727) Reddy R. … Busch H. (J. Biol. Chem. 1985) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli. (PMID: 15574332) Boulon S. … Bertrand E. (Mol. Cell 2004) 3 64

Products for SNORD118 Gene

Sources for SNORD118 Gene

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